Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.38■□□□□ 0.05
HMGA1P17096 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGA1P17096 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGA1P17096 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.38■□□□□ 0.05
HMGA1P17096 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
HMGA1P17096 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.38■□□□□ 0.05
HMGA1P17096 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HMGA1P17096 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGA1P17096 AC133540.1-201ENST00000620845 1019 ntBASIC15.38■□□□□ 0.05
HMGA1P17096 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.38■□□□□ 0.05
HMGA1P17096 NAP1L6-202ENST00000641404 1222 ntBASIC15.38■□□□□ 0.05
HMGA1P17096 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGA1P17096 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
HMGA1P17096 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
HMGA1P17096 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
HMGA1P17096 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGA1P17096 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGA1P17096 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGA1P17096 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGA1P17096 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGA1P17096 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGA1P17096 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGA1P17096 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
HMGA1P17096 AC139712.1-201ENST00000378256 1875 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 AC018442.1-201ENST00000421439 2061 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 TCAF2P1-201ENST00000291129 2421 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
HMGA1P17096 AJ011931.1-201ENST00000618749 2492 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 AC091046.1-201ENST00000331871 207 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.37■□□□□ 0.05
HMGA1P17096 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGA1P17096 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 RBM8B-201ENST00000555532 525 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGA1P17096 AC020922.3-201ENST00000595064 547 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 AL133499.1-201ENST00000596207 608 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 AL157813.1-201ENST00000612996 587 ntBASIC15.37■□□□□ 0.05
HMGA1P17096 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGA1P17096 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGA1P17096 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
HMGA1P17096 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.37■□□□□ 0.05
HMGA1P17096 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
HMGA1P17096 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGA1P17096 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGA1P17096 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HMGA1P17096 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
HMGA1P17096 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGA1P17096 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGA1P17096 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
HMGA1P17096 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGA1P17096 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.36■□□□□ 0.05
HMGA1P17096 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
HMGA1P17096 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGA1P17096 MIR3907-201ENST00000579424 151 ntBASIC15.36■□□□□ 0.05
HMGA1P17096 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGA1P17096 AL353770.1-201ENST00000614915 403 ntBASIC15.36■□□□□ 0.05
HMGA1P17096 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.36■□□□□ 0.05
HMGA1P17096 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
HMGA1P17096 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
HMGA1P17096 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGA1P17096 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms