Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC092910.2-201ENST00000491262 348 ntBASIC15.08■□□□□ 0.01
VCANP13611 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC15.08■□□□□ 0.01
VCANP13611 AP001462.1-201ENST00000594089 452 ntBASIC15.08■□□□□ 0.01
VCANP13611 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
VCANP13611 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.08■□□□□ 0.01
VCANP13611 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VCANP13611 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
VCANP13611 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
VCANP13611 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC15.08■□□□□ 0
VCANP13611 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.08■□□□□ 0
VCANP13611 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC15.08■□□□□ 0
VCANP13611 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.08■□□□□ 0
VCANP13611 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC15.08■□□□□ 0
VCANP13611 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC15.08■□□□□ 0
VCANP13611 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 AL118522.1-201ENST00000611368 560 ntBASIC15.08■□□□□ 0
VCANP13611 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.08■□□□□ 0
VCANP13611 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.08■□□□□ 0
VCANP13611 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.08■□□□□ 0
VCANP13611 AL008638.4-201ENST00000624792 1315 ntBASIC15.08■□□□□ 0
VCANP13611 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
VCANP13611 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC15.08■□□□□ 0
VCANP13611 XBP1P1-201ENST00000436573 652 ntBASIC15.08■□□□□ 0
VCANP13611 RN7SL672P-201ENST00000474091 317 ntBASIC15.08■□□□□ 0
VCANP13611 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC15.08■□□□□ 0
VCANP13611 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC15.08■□□□□ 0
VCANP13611 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC15.08■□□□□ 0
VCANP13611 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.08■□□□□ 0
VCANP13611 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.08■□□□□ 0
VCANP13611 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VCANP13611 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
VCANP13611 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 AC025594.1-201ENST00000469533 543 ntBASIC15.07■□□□□ 0
VCANP13611 RN7SL363P-201ENST00000482412 273 ntBASIC15.07■□□□□ 0
VCANP13611 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
VCANP13611 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC15.07■□□□□ 0
VCANP13611 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC15.07■□□□□ 0
VCANP13611 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC15.07■□□□□ 0
VCANP13611 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.07■□□□□ 0
VCANP13611 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC15.07■□□□□ 0
VCANP13611 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC15.07■□□□□ 0
VCANP13611 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC15.07■□□□□ 0
VCANP13611 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.07■□□□□ 0
VCANP13611 RARS-210ENST00000626454 177 ntTSL 5 BASIC15.07■□□□□ 0
VCANP13611 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.07■□□□□ 0
VCANP13611 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
VCANP13611 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.07■□□□□ 0
VCANP13611 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC15.07■□□□□ 0
VCANP13611 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 KRT18P36-201ENST00000411618 1276 ntBASIC15.07■□□□□ 0
VCANP13611 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 RN7SL478P-201ENST00000584358 298 ntBASIC15.07■□□□□ 0
VCANP13611 EMP3-204ENST00000596315 761 ntTSL 2 BASIC15.07■□□□□ 0
VCANP13611 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC15.07■□□□□ 0
VCANP13611 AC138627.1-201ENST00000641127 1257 ntBASIC15.07■□□□□ 0
VCANP13611 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
VCANP13611 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VCANP13611 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
VCANP13611 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.06■□□□□ 0
VCANP13611 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms