Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 MBP-201ENST00000354542 575 ntTSL 2 BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 CTBP2P4-201ENST00000513884 920 ntBASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 LINC01165-201ENST00000445190 1623 ntBASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC19.69■□□□□ 0.74
CSB-PGBD3P0DP91 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 DNM1P30-201ENST00000563586 452 ntBASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 PHBP15-201ENST00000574228 665 ntBASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 GMFG-209ENST00000600322 622 ntTSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 AC023090.2-201ENST00000625182 2110 ntBASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 DDX5-235ENST00000630471 473 ntTSL 4 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 AC092299.1-201ENST00000632679 757 ntBASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 ZBED1P1-201ENST00000502364 1930 ntBASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CSB-PGBD3P0DP91 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 Z69890.1-201ENST00000382990 339 ntBASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 AL627389.1-201ENST00000413508 1182 ntBASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 MIR4649-201ENST00000582839 64 ntBASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 BX088702.1-201ENST00000610784 235 ntBASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CSB-PGBD3P0DP91 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 AP000845.1-201ENST00000581677 2131 ntBASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC19.66■□□□□ 0.74
CSB-PGBD3P0DP91 SOD2-202ENST00000367054 815 ntTSL 2 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms