Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC21.32■■□□□ 1
MSH5O43196 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC21.32■■□□□ 1
MSH5O43196 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
MSH5O43196 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 AC005692.1-201ENST00000461145 1439 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
MSH5O43196 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.32■■□□□ 1
MSH5O43196 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 IGLC2-201ENST00000390323 462 ntAPPRIS P1 BASIC21.32■■□□□ 1
MSH5O43196 IGLC3-201ENST00000390325 462 ntAPPRIS P1 BASIC21.32■■□□□ 1
MSH5O43196 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.32■■□□□ 1
MSH5O43196 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 RPL35P3-201ENST00000403133 371 ntBASIC21.32■■□□□ 1
MSH5O43196 SUN1-204ENST00000403868 978 ntTSL 2 BASIC21.32■■□□□ 1
MSH5O43196 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 NRIR-202ENST00000414795 506 ntTSL 3 BASIC21.32■■□□□ 1
MSH5O43196 MTCO2P21-201ENST00000419780 677 ntBASIC21.32■■□□□ 1
MSH5O43196 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC21.32■■□□□ 1
MSH5O43196 AC142381.1-201ENST00000426099 345 ntBASIC21.32■■□□□ 1
MSH5O43196 UBE2V2P3-201ENST00000433562 437 ntBASIC21.32■■□□□ 1
MSH5O43196 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 AC098614.3-201ENST00000438957 440 ntBASIC21.32■■□□□ 1
MSH5O43196 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC21.32■■□□□ 1
MSH5O43196 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC21.32■■□□□ 1
MSH5O43196 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 AC105233.2-201ENST00000523697 349 ntBASIC21.32■■□□□ 1
MSH5O43196 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC21.32■■□□□ 1
MSH5O43196 AF228730.5-201ENST00000530288 346 ntBASIC21.32■■□□□ 1
MSH5O43196 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
MSH5O43196 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC21.32■■□□□ 1
MSH5O43196 NARF-IT1-201ENST00000584012 769 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC21.32■■□□□ 1
MSH5O43196 AC137630.4-201ENST00000609473 479 ntBASIC21.32■■□□□ 1
MSH5O43196 TEX28P1-201ENST00000613479 1221 ntBASIC21.32■■□□□ 1
MSH5O43196 TEX28P2-201ENST00000617764 1221 ntBASIC21.32■■□□□ 1
MSH5O43196 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
MSH5O43196 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC21.32■■□□□ 1
MSH5O43196 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC21.32■■□□□ 1
MSH5O43196 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
MSH5O43196 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 AC009120.6-201ENST00000616116 1460 ntBASIC21.32■■□□□ 1
MSH5O43196 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
MSH5O43196 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 CETN4P-206ENST00000642099 2168 ntBASIC21.31■■□□□ 1
MSH5O43196 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC21.31■■□□□ 1
MSH5O43196 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
MSH5O43196 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 PGR-210ENST00000619228 3038 ntTSL 5 BASIC21.31■■□□□ 1
MSH5O43196 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
MSH5O43196 PP14571-201ENST00000404327 934 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 AL117344.1-201ENST00000407196 616 ntBASIC21.31■■□□□ 1
MSH5O43196 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC21.31■■□□□ 1
MSH5O43196 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 CCDC144NL-AS1-206ENST00000443508 1216 ntTSL 3 BASIC21.31■■□□□ 1
MSH5O43196 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC21.31■■□□□ 1
MSH5O43196 AC015908.1-201ENST00000478739 476 ntBASIC21.31■■□□□ 1
MSH5O43196 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC21.31■■□□□ 1
MSH5O43196 BAALC-AS1-202ENST00000500902 993 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC21.31■■□□□ 1
MSH5O43196 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 OR4R2P-201ENST00000530815 597 ntBASIC21.31■■□□□ 1
MSH5O43196 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH5O43196 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 AP003717.3-201ENST00000544832 1180 ntBASIC21.31■■□□□ 1
MSH5O43196 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC21.31■■□□□ 1
MSH5O43196 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC21.31■■□□□ 1
MSH5O43196 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC21.31■■□□□ 1
MSH5O43196 AL121655.1-201ENST00000605811 308 ntBASIC21.31■■□□□ 1
MSH5O43196 AC008494.3-201ENST00000606615 944 ntBASIC21.31■■□□□ 1
MSH5O43196 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC21.31■■□□□ 1
MSH5O43196 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms