Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 ACKR1-201ENST00000368121 1240 ntBASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 TPT1P11-201ENST00000458482 498 ntBASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 ELK1P1-201ENST00000485699 580 ntBASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AC026434.2-201ENST00000506094 1078 ntBASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 API5-211ENST00000534695 560 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AL096865.1-201ENST00000606796 927 ntBASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AC005252.2-201ENST00000624630 1141 ntBASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AC007326.2-201ENST00000624224 7579 ntBASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 AL354702.1-201ENST00000442006 1960 ntBASIC14.42□□□□□ -0.1
VPS29Q9UBQ0 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 AC015802.1-201ENST00000588104 1449 ntBASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms