Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC20.83■□□□□ 0.92
USP47Q96K76 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC20.83■□□□□ 0.92
USP47Q96K76 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC20.83■□□□□ 0.92
USP47Q96K76 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC20.83■□□□□ 0.92
USP47Q96K76 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC20.83■□□□□ 0.92
USP47Q96K76 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC20.83■□□□□ 0.92
USP47Q96K76 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC20.83■□□□□ 0.92
USP47Q96K76 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC20.83■□□□□ 0.92
USP47Q96K76 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC20.83■□□□□ 0.92
USP47Q96K76 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
USP47Q96K76 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC20.83■□□□□ 0.92
USP47Q96K76 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP47Q96K76 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP47Q96K76 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
USP47Q96K76 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP47Q96K76 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
USP47Q96K76 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC20.82■□□□□ 0.92
USP47Q96K76 KHSRPP1-201ENST00000427983 1768 ntBASIC20.82■□□□□ 0.92
USP47Q96K76 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 AC139712.1-201ENST00000378256 1875 ntBASIC20.82■□□□□ 0.92
USP47Q96K76 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
USP47Q96K76 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC20.82■□□□□ 0.92
USP47Q96K76 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC20.82■□□□□ 0.92
USP47Q96K76 AC022447.6-201ENST00000515522 438 ntBASIC20.82■□□□□ 0.92
USP47Q96K76 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC20.82■□□□□ 0.92
USP47Q96K76 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC20.82■□□□□ 0.92
USP47Q96K76 AL162426.1-201ENST00000624141 743 ntBASIC20.82■□□□□ 0.92
USP47Q96K76 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC20.82■□□□□ 0.92
USP47Q96K76 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC20.82■□□□□ 0.92
USP47Q96K76 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP47Q96K76 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC20.81■□□□□ 0.92
USP47Q96K76 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC20.81■□□□□ 0.92
USP47Q96K76 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
USP47Q96K76 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
USP47Q96K76 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC20.81■□□□□ 0.92
USP47Q96K76 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 BTBD6P1-201ENST00000412176 1267 ntBASIC20.81■□□□□ 0.92
USP47Q96K76 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.81■□□□□ 0.92
USP47Q96K76 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.81■□□□□ 0.92
USP47Q96K76 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC20.81■□□□□ 0.92
USP47Q96K76 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.81■□□□□ 0.92
USP47Q96K76 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC20.81■□□□□ 0.92
USP47Q96K76 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
USP47Q96K76 AC008825.2-201ENST00000603374 718 ntBASIC20.81■□□□□ 0.92
USP47Q96K76 AC244093.1-201ENST00000610837 814 ntBASIC20.81■□□□□ 0.92
USP47Q96K76 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
USP47Q96K76 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP47Q96K76 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 AC006504.5-208ENST00000588784 2401 ntBASIC20.8■□□□□ 0.92
USP47Q96K76 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC20.8■□□□□ 0.92
USP47Q96K76 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 AC113367.3-201ENST00000508316 1912 ntBASIC20.8■□□□□ 0.92
USP47Q96K76 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 F10-203ENST00000409306 1450 ntTSL 3 BASIC20.8■□□□□ 0.92
USP47Q96K76 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC20.8■□□□□ 0.92
USP47Q96K76 AK6-201ENST00000380818 1183 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC20.8■□□□□ 0.92
USP47Q96K76 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC20.8■□□□□ 0.92
USP47Q96K76 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP47Q96K76 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP47Q96K76 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
USP47Q96K76 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms