Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
VPS13CQ709C8 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC12.15□□□□□ -0.47
VPS13CQ709C8 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.15□□□□□ -0.47
VPS13CQ709C8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
VPS13CQ709C8 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.15□□□□□ -0.47
VPS13CQ709C8 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 ZBED1P1-201ENST00000502364 1930 ntBASIC12.14□□□□□ -0.47
VPS13CQ709C8 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 IGHV1-12-201ENST00000518307 205 ntBASIC12.14□□□□□ -0.47
VPS13CQ709C8 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 DUT-207ENST00000559416 635 ntTSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 CICP12-201ENST00000455801 843 ntBASIC12.14□□□□□ -0.47
VPS13CQ709C8 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 AC055811.3-201ENST00000584952 686 ntBASIC12.14□□□□□ -0.47
VPS13CQ709C8 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 AC087481.3-201ENST00000602886 1894 ntBASIC12.14□□□□□ -0.47
VPS13CQ709C8 AHCYP4-201ENST00000419201 1315 ntBASIC12.14□□□□□ -0.47
VPS13CQ709C8 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 AREG-202ENST00000502307 956 ntTSL 5 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
VPS13CQ709C8 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC12.14□□□□□ -0.47
VPS13CQ709C8 AC092299.1-201ENST00000632679 757 ntBASIC12.14□□□□□ -0.47
VPS13CQ709C8 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AC232323.1-201ENST00000540724 2099 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 KHSRPP1-201ENST00000427983 1768 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AC138701.2-201ENST00000553634 226 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AP002353.1-201ENST00000528257 1599 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AC244197.1-201ENST00000456494 951 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AC144831.1-201ENST00000573312 2656 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 CELP-201ENST00000411440 1249 ntTSL 5 BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms