Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HOXA1P49639 BX324167.2-201ENST00000623717 3316 ntBASIC12.58□□□□□ -0.4
HOXA1P49639 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
HOXA1P49639 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXA1P49639 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC12.58□□□□□ -0.4
HOXA1P49639 KRT18P3-201ENST00000451602 1288 ntBASIC12.58□□□□□ -0.4
HOXA1P49639 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXA1P49639 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC12.58□□□□□ -0.4
HOXA1P49639 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC12.58□□□□□ -0.4
HOXA1P49639 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.58□□□□□ -0.4
HOXA1P49639 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
HOXA1P49639 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 AC027601.4-201ENST00000611259 610 ntBASIC12.58□□□□□ -0.4
HOXA1P49639 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 INTS4P1-203ENST00000641008 3683 ntBASIC12.58□□□□□ -0.4
HOXA1P49639 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXA1P49639 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXA1P49639 IL9RP2-201ENST00000423948 1312 ntBASIC12.58□□□□□ -0.4
HOXA1P49639 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 UXT-AS1-201ENST00000590504 1525 ntBASIC12.57□□□□□ -0.4
HOXA1P49639 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 AC099521.2-201ENST00000619354 2036 ntBASIC12.57□□□□□ -0.4
HOXA1P49639 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 ZBED1P1-201ENST00000502364 1930 ntBASIC12.57□□□□□ -0.4
HOXA1P49639 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA1P49639 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 EEF1DP4-201ENST00000446006 880 ntBASIC12.57□□□□□ -0.4
HOXA1P49639 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA1P49639 RPL18-209ENST00000550645 463 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 RPL18-214ENST00000552588 559 ntTSL 3 BASIC12.57□□□□□ -0.4
HOXA1P49639 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.57□□□□□ -0.4
HOXA1P49639 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC12.57□□□□□ -0.4
HOXA1P49639 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.57□□□□□ -0.4
HOXA1P49639 AC140113.2-201ENST00000604370 208 ntBASIC12.57□□□□□ -0.4
HOXA1P49639 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA1P49639 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms