Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC20.48■□□□□ 0.87
NPHP4O75161 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 AC092896.1-201ENST00000465850 380 ntBASIC20.48■□□□□ 0.87
NPHP4O75161 RPS18P9-201ENST00000482817 460 ntBASIC20.48■□□□□ 0.87
NPHP4O75161 RN7SL147P-201ENST00000487345 298 ntBASIC20.48■□□□□ 0.87
NPHP4O75161 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC20.48■□□□□ 0.87
NPHP4O75161 GAS7-216ENST00000583882 553 ntTSL 5 BASIC20.48■□□□□ 0.87
NPHP4O75161 AC090510.3-201ENST00000615831 821 ntBASIC20.48■□□□□ 0.87
NPHP4O75161 AL591471.1-201ENST00000621855 229 ntBASIC20.48■□□□□ 0.87
NPHP4O75161 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC20.48■□□□□ 0.87
NPHP4O75161 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
NPHP4O75161 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
NPHP4O75161 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC20.48■□□□□ 0.87
NPHP4O75161 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC20.48■□□□□ 0.87
NPHP4O75161 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP4O75161 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
NPHP4O75161 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 AL139384.1-201ENST00000612143 3047 ntBASIC20.47■□□□□ 0.87
NPHP4O75161 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 NKILA-202ENST00000614771 2598 ntBASIC20.47■□□□□ 0.87
NPHP4O75161 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
NPHP4O75161 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 SNORD3B-1-201ENST00000577988 758 ntBASIC20.47■□□□□ 0.87
NPHP4O75161 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 AL662844.4-201ENST00000606367 2838 ntBASIC20.47■□□□□ 0.87
NPHP4O75161 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
NPHP4O75161 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP4O75161 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP4O75161 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
NPHP4O75161 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP4O75161 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC20.46■□□□□ 0.87
NPHP4O75161 SEPHS2P1-201ENST00000511618 1162 ntBASIC20.46■□□□□ 0.87
NPHP4O75161 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP4O75161 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC20.46■□□□□ 0.87
NPHP4O75161 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP4O75161 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 FKBP4P8-201ENST00000610931 1369 ntBASIC20.46■□□□□ 0.87
NPHP4O75161 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP4O75161 SSR4P1-203ENST00000599569 2260 ntBASIC20.46■□□□□ 0.87
NPHP4O75161 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP4O75161 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
NPHP4O75161 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP4O75161 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP4O75161 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
NPHP4O75161 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP4O75161 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP4O75161 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
NPHP4O75161 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms