Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 MIR6727-201ENST00000620702 65 ntBASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 AC113367.3-201ENST00000508316 1912 ntBASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 AC009093.2-202ENST00000620513 2079 ntBASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 FKBP4P6-201ENST00000457486 1332 ntBASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 MESTP3-201ENST00000503460 968 ntBASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 AC022616.1-201ENST00000518688 554 ntBASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 AP001889.1-201ENST00000525414 633 ntBASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 AC103988.2-201ENST00000561804 725 ntBASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 AC138466.3-201ENST00000619983 221 ntBASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 ENPP7P14-201ENST00000621765 1040 ntBASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 AC005912.2-201ENST00000619492 2400 ntBASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHROOM3Q8TF72 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 ACKR1-201ENST00000368121 1240 ntBASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 IGHJ2P-201ENST00000454480 60 ntBASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 FTLP10-202ENST00000505798 471 ntBASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SHROOM3Q8TF72 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 AC099063.4-201ENST00000641099 1602 ntBASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.26■□□□□ 0.03
SHROOM3Q8TF72 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms