Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.58□□□□□ -0.24
SPTA1P02549 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SPTA1P02549 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SPTA1P02549 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.58□□□□□ -0.24
SPTA1P02549 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 AC018463.1-201ENST00000456674 917 ntBASIC13.58□□□□□ -0.24
SPTA1P02549 RN7SL846P-201ENST00000467429 292 ntBASIC13.58□□□□□ -0.24
SPTA1P02549 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC13.58□□□□□ -0.24
SPTA1P02549 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC13.58□□□□□ -0.24
SPTA1P02549 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 AC026803.1-201ENST00000569130 274 ntBASIC13.58□□□□□ -0.24
SPTA1P02549 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
SPTA1P02549 MIR6769A-201ENST00000617340 73 ntBASIC13.58□□□□□ -0.24
SPTA1P02549 LINC00431-202ENST00000636375 159 ntBASIC13.58□□□□□ -0.24
SPTA1P02549 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SPTA1P02549 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.57□□□□□ -0.24
SPTA1P02549 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.57□□□□□ -0.24
SPTA1P02549 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 AL157414.3-201ENST00000624276 1954 ntBASIC13.57□□□□□ -0.24
SPTA1P02549 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SPTA1P02549 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SPTA1P02549 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 MST1L-201ENST00000442552 2185 ntBASIC13.57□□□□□ -0.24
SPTA1P02549 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 RN7SL258P-201ENST00000478664 300 ntBASIC13.57□□□□□ -0.24
SPTA1P02549 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.57□□□□□ -0.24
SPTA1P02549 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.57□□□□□ -0.24
SPTA1P02549 DUX4L47-201ENST00000566374 394 ntBASIC13.57□□□□□ -0.24
SPTA1P02549 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.57□□□□□ -0.24
SPTA1P02549 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC13.57□□□□□ -0.24
SPTA1P02549 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SPTA1P02549 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SPTA1P02549 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC13.56□□□□□ -0.24
SPTA1P02549 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SPTA1P02549 AP003398.1-201ENST00000531124 318 ntBASIC13.56□□□□□ -0.24
SPTA1P02549 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.56□□□□□ -0.24
SPTA1P02549 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.56□□□□□ -0.24
SPTA1P02549 AC103810.10-201ENST00000606504 343 ntBASIC13.56□□□□□ -0.24
SPTA1P02549 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
SPTA1P02549 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.56□□□□□ -0.24
SPTA1P02549 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.56□□□□□ -0.24
SPTA1P02549 AC144522.1-201ENST00000625111 1658 ntBASIC13.56□□□□□ -0.24
SPTA1P02549 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.56□□□□□ -0.24
SPTA1P02549 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.56□□□□□ -0.24
SPTA1P02549 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SPTA1P02549 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SPTA1P02549 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
SPTA1P02549 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13.56□□□□□ -0.24
SPTA1P02549 HCG27-204ENST00000424675 895 ntTSL 3 BASIC13.56□□□□□ -0.24
SPTA1P02549 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC13.56□□□□□ -0.24
SPTA1P02549 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms