Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM38O00635 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM38O00635 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM38O00635 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 AC022137.2-201ENST00000503482 481 ntBASIC15.22■□□□□ 0.03
TRIM38O00635 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.22■□□□□ 0.03
TRIM38O00635 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM38O00635 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM38O00635 AC079316.1-201ENST00000548397 411 ntBASIC15.22■□□□□ 0.03
TRIM38O00635 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM38O00635 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM38O00635 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.22■□□□□ 0.03
TRIM38O00635 AC244093.1-201ENST00000610837 814 ntBASIC15.22■□□□□ 0.03
TRIM38O00635 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM38O00635 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 RHOXF1P1-202ENST00000635473 501 ntBASIC15.22■□□□□ 0.03
TRIM38O00635 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.22■□□□□ 0.03
TRIM38O00635 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.22■□□□□ 0.03
TRIM38O00635 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM38O00635 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM38O00635 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM38O00635 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM38O00635 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM38O00635 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRIM38O00635 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM38O00635 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM38O00635 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 AC104581.4-201ENST00000623126 3052 ntBASIC15.21■□□□□ 0.03
TRIM38O00635 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 RPL13AP20-201ENST00000459725 609 ntBASIC15.21■□□□□ 0.03
TRIM38O00635 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM38O00635 AC099548.2-209ENST00000480264 625 ntBASIC15.21■□□□□ 0.03
TRIM38O00635 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM38O00635 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM38O00635 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TRIM38O00635 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.21■□□□□ 0.03
TRIM38O00635 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM38O00635 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM38O00635 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM38O00635 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM38O00635 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM38O00635 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
TRIM38O00635 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM38O00635 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM38O00635 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
TRIM38O00635 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.21■□□□□ 0.02
TRIM38O00635 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM38O00635 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM38O00635 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM38O00635 C2orf27AP3-201ENST00000434123 579 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 PFN1P12-201ENST00000455938 534 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM38O00635 AP001582.1-201ENST00000525856 295 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
TRIM38O00635 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.2■□□□□ 0.02
TRIM38O00635 AC093813.1-201ENST00000605066 256 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 AC084346.2-201ENST00000607097 949 ntBASIC15.2■□□□□ 0.02
TRIM38O00635 AC107373.2-201ENST00000607735 490 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms