Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 LILRP1-201ENST00000444199 1370 ntBASIC14.28□□□□□ -0.12
UPK1AO00322 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.28□□□□□ -0.12
UPK1AO00322 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.28□□□□□ -0.12
UPK1AO00322 API5-211ENST00000534695 560 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
UPK1AO00322 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.28□□□□□ -0.12
UPK1AO00322 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 MIR4745-201ENST00000577608 62 ntBASIC14.28□□□□□ -0.12
UPK1AO00322 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.28□□□□□ -0.12
UPK1AO00322 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 AC063926.3-201ENST00000624734 5658 ntBASIC14.28□□□□□ -0.12
UPK1AO00322 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
UPK1AO00322 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
UPK1AO00322 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.28□□□□□ -0.12
UPK1AO00322 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
UPK1AO00322 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
UPK1AO00322 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
UPK1AO00322 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.27□□□□□ -0.12
UPK1AO00322 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
UPK1AO00322 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
UPK1AO00322 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
UPK1AO00322 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.27□□□□□ -0.13
UPK1AO00322 AL645937.2-201ENST00000396808 931 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 C1QBPP1-201ENST00000400117 770 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.27□□□□□ -0.13
UPK1AO00322 MYCLP2-201ENST00000449268 967 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 TPT1P11-201ENST00000458482 498 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.27□□□□□ -0.13
UPK1AO00322 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.27□□□□□ -0.13
UPK1AO00322 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.27□□□□□ -0.13
UPK1AO00322 AL359711.2-201ENST00000563105 872 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.27□□□□□ -0.13
UPK1AO00322 AC124283.3-201ENST00000570869 594 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 TMEM261P1-201ENST00000604899 340 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 AC007431.3-201ENST00000623221 587 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.27□□□□□ -0.13
UPK1AO00322 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
UPK1AO00322 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.27□□□□□ -0.13
UPK1AO00322 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.27□□□□□ -0.13
UPK1AO00322 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 AC055811.4-201ENST00000624039 1754 ntBASIC14.27□□□□□ -0.13
UPK1AO00322 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
UPK1AO00322 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.26□□□□□ -0.13
UPK1AO00322 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
UPK1AO00322 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
UPK1AO00322 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
UPK1AO00322 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.26□□□□□ -0.13
UPK1AO00322 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UPK1AO00322 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms