Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 CTBP2P5-201ENST00000454986 1264 ntBASIC15□□□□□ -0.01
TRIM39Q9HCM9 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AL359881.2-201ENST00000602973 570 ntBASIC15□□□□□ -0.01
TRIM39Q9HCM9 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AC055811.4-201ENST00000624039 1754 ntBASIC15□□□□□ -0.01
TRIM39Q9HCM9 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 AL137783.1-201ENST00000623494 1896 ntBASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 TNRC18P2-201ENST00000417666 2714 ntBASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 RNA5SP486-201ENST00000515961 83 ntBASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 KRT90P-201ENST00000549264 1064 ntBASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 CICP14-201ENST00000629111 2732 ntBASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM39Q9HCM9 LILRP1-201ENST00000444199 1370 ntBASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM39Q9HCM9 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms