Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AC104306.2-201ENST00000451877 341 ntBASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 MESTP3-201ENST00000503460 968 ntBASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AC106820.3-201ENST00000561653 397 ntBASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AC244157.2-201ENST00000616239 1006 ntBASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AL139099.5-201ENST00000635274 300 ntBASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 RN7SL832P-201ENST00000607781 1756 ntBASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 POM121L10P-201ENST00000436994 1285 ntBASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 AP003171.2-201ENST00000528208 925 ntBASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 AC132872.1-201ENST00000566986 1195 ntBASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 AC104982.3-201ENST00000581995 514 ntBASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 AL096828.3-201ENST00000615354 462 ntBASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAIPQ9BWF2 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms