Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC226150.1-201ENST00000544259 466 ntBASIC14.47□□□□□ -0.09
VPS13AQ96RL7 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 PTGER4P2-201ENST00000328411 252 ntBASIC14.47□□□□□ -0.09
VPS13AQ96RL7 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 PTGER4P3-201ENST00000458150 252 ntBASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC092896.1-201ENST00000465850 380 ntBASIC14.47□□□□□ -0.09
VPS13AQ96RL7 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC124068.2-201ENST00000569473 1109 ntBASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 HNRNPA1P25-201ENST00000422644 937 ntBASIC14.46□□□□□ -0.09
VPS13AQ96RL7 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 AL512599.1-201ENST00000430724 685 ntBASIC14.46□□□□□ -0.09
VPS13AQ96RL7 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 AC010632.2-201ENST00000588369 1224 ntBASIC14.46□□□□□ -0.09
VPS13AQ96RL7 AP000322.3-201ENST00000608665 388 ntBASIC14.46□□□□□ -0.09
VPS13AQ96RL7 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 AHCYP4-201ENST00000419201 1315 ntBASIC14.46□□□□□ -0.09
VPS13AQ96RL7 MTHFR-217ENST00000641820 1569 ntBASIC14.46□□□□□ -0.09
VPS13AQ96RL7 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 ALG3P1-201ENST00000508806 1114 ntBASIC14.46□□□□□ -0.09
VPS13AQ96RL7 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS13AQ96RL7 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 FAM197Y6-201ENST00000420524 766 ntBASIC14.46□□□□□ -0.1
VPS13AQ96RL7 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms