Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
FOXA1P55317 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.59□□□□□ -0.07
FOXA1P55317 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
FOXA1P55317 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.59□□□□□ -0.07
FOXA1P55317 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.59□□□□□ -0.07
FOXA1P55317 SPDYE22P-201ENST00000582158 798 ntBASIC14.59□□□□□ -0.07
FOXA1P55317 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 AC106028.4-201ENST00000614509 607 ntBASIC14.59□□□□□ -0.07
FOXA1P55317 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 PRSS30P-206ENST00000641773 873 ntBASIC14.59□□□□□ -0.07
FOXA1P55317 AC126755.1-201ENST00000525846 6405 ntBASIC14.59□□□□□ -0.07
FOXA1P55317 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
FOXA1P55317 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.59□□□□□ -0.07
FOXA1P55317 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
FOXA1P55317 AC010327.5-201ENST00000586923 3061 ntBASIC14.59□□□□□ -0.07
FOXA1P55317 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA1P55317 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA1P55317 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA1P55317 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA1P55317 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.58□□□□□ -0.07
FOXA1P55317 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.58□□□□□ -0.07
FOXA1P55317 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA1P55317 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
FOXA1P55317 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA1P55317 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA1P55317 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.58□□□□□ -0.08
FOXA1P55317 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 AC012617.1-204ENST00000586340 2305 ntBASIC14.58□□□□□ -0.08
FOXA1P55317 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
FOXA1P55317 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
FOXA1P55317 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
FOXA1P55317 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.58□□□□□ -0.08
FOXA1P55317 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.58□□□□□ -0.08
FOXA1P55317 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.58□□□□□ -0.08
FOXA1P55317 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 DUX4L47-201ENST00000566374 394 ntBASIC14.58□□□□□ -0.08
FOXA1P55317 AC093813.1-201ENST00000605066 256 ntBASIC14.58□□□□□ -0.08
FOXA1P55317 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
FOXA1P55317 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
FOXA1P55317 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA1P55317 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms