Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 IFNWP2-201ENST00000431203 580 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC17.65■□□□□ 0.42
BRCA1P38398 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 BCL2L12P1-201ENST00000508390 733 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 ESR1-214ENST00000638569 132 ntTSL 5 BASIC17.65■□□□□ 0.42
BRCA1P38398 CYP2T1P-202ENST00000641596 2535 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.65■□□□□ 0.42
BRCA1P38398 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
BRCA1P38398 AC112693.3-201ENST00000624819 1983 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.65■□□□□ 0.42
BRCA1P38398 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
BRCA1P38398 OR52M2P-201ENST00000414298 959 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
BRCA1P38398 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC17.65■□□□□ 0.42
BRCA1P38398 TYMSP2-201ENST00000589501 424 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC17.65■□□□□ 0.42
BRCA1P38398 AC110057.1-201ENST00000636031 898 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 LINC01101-201ENST00000622953 1884 ntBASIC17.65■□□□□ 0.42
BRCA1P38398 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
BRCA1P38398 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
BRCA1P38398 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
BRCA1P38398 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.64■□□□□ 0.42
BRCA1P38398 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC17.64■□□□□ 0.42
BRCA1P38398 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
BRCA1P38398 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.64■□□□□ 0.41
BRCA1P38398 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
BRCA1P38398 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
BRCA1P38398 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
BRCA1P38398 STK24P1-201ENST00000455035 1291 ntBASIC17.64■□□□□ 0.41
BRCA1P38398 HINT1-205ENST00000508488 703 ntTSL 2 BASIC17.64■□□□□ 0.41
BRCA1P38398 AL136982.5-201ENST00000605222 294 ntBASIC17.64■□□□□ 0.41
BRCA1P38398 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.64■□□□□ 0.41
BRCA1P38398 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
BRCA1P38398 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
BRCA1P38398 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
BRCA1P38398 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
BRCA1P38398 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.64■□□□□ 0.41
BRCA1P38398 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BRCA1P38398 WASH7P-201ENST00000488147 1351 ntBASIC17.64■□□□□ 0.41
BRCA1P38398 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.64■□□□□ 0.41
BRCA1P38398 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
BRCA1P38398 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 AP000354.1-201ENST00000396982 456 ntBASIC17.63■□□□□ 0.41
BRCA1P38398 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 GRPEL2P1-201ENST00000453145 339 ntBASIC17.63■□□□□ 0.41
BRCA1P38398 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 CMC2-204ENST00000562713 573 ntTSL 3 BASIC17.63■□□□□ 0.41
BRCA1P38398 CMC2-209ENST00000565108 399 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC17.63■□□□□ 0.41
BRCA1P38398 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.63■□□□□ 0.41
BRCA1P38398 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
BRCA1P38398 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms