Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.16□□□□□ -0.3
COL8A1P27658 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 AL158070.2-201ENST00000623713 1621 ntBASIC13.16□□□□□ -0.3
COL8A1P27658 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 AC006449.5-201ENST00000610658 2098 ntBASIC13.16□□□□□ -0.3
COL8A1P27658 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL8A1P27658 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 AC026691.1-201ENST00000602502 2017 ntBASIC13.15□□□□□ -0.3
COL8A1P27658 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
COL8A1P27658 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.15□□□□□ -0.3
COL8A1P27658 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL8A1P27658 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC13.15□□□□□ -0.3
COL8A1P27658 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL8A1P27658 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.15□□□□□ -0.3
COL8A1P27658 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL8A1P27658 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC13.15□□□□□ -0.3
COL8A1P27658 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC13.15□□□□□ -0.3
COL8A1P27658 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC13.15□□□□□ -0.3
COL8A1P27658 FAM86KP-201ENST00000509817 987 ntBASIC13.15□□□□□ -0.3
COL8A1P27658 POU5F1P2-201ENST00000521750 823 ntBASIC13.15□□□□□ -0.3
COL8A1P27658 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC13.15□□□□□ -0.3
COL8A1P27658 AC026803.1-201ENST00000569130 274 ntBASIC13.15□□□□□ -0.3
COL8A1P27658 AC004466.1-201ENST00000599515 1080 ntBASIC13.15□□□□□ -0.3
COL8A1P27658 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.15□□□□□ -0.3
COL8A1P27658 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL8A1P27658 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
COL8A1P27658 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
COL8A1P27658 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.15□□□□□ -0.3
COL8A1P27658 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL8A1P27658 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
COL8A1P27658 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
COL8A1P27658 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.15□□□□□ -0.31
COL8A1P27658 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.15□□□□□ -0.31
COL8A1P27658 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
COL8A1P27658 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.15□□□□□ -0.31
COL8A1P27658 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
COL8A1P27658 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
COL8A1P27658 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.14□□□□□ -0.31
COL8A1P27658 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.14□□□□□ -0.31
COL8A1P27658 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC13.14□□□□□ -0.31
COL8A1P27658 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC13.14□□□□□ -0.31
COL8A1P27658 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms