Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.69■□□□□ 0.26
TPM1P09493 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.69■□□□□ 0.26
TPM1P09493 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.69■□□□□ 0.26
TPM1P09493 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.69■□□□□ 0.26
TPM1P09493 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.69■□□□□ 0.26
TPM1P09493 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.69■□□□□ 0.26
TPM1P09493 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.69■□□□□ 0.26
TPM1P09493 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
TPM1P09493 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TPM1P09493 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
TPM1P09493 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.69■□□□□ 0.26
TPM1P09493 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
TPM1P09493 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 CICP17-201ENST00000418553 2377 ntBASIC16.69■□□□□ 0.26
TPM1P09493 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 ELL2P1-201ENST00000413990 1906 ntBASIC16.68■□□□□ 0.26
TPM1P09493 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TPM1P09493 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TPM1P09493 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 TCAF1P1-201ENST00000414990 2232 ntBASIC16.68■□□□□ 0.26
TPM1P09493 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TPM1P09493 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM1P09493 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM1P09493 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
TPM1P09493 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM1P09493 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.68■□□□□ 0.26
TPM1P09493 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM1P09493 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM1P09493 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.68■□□□□ 0.26
TPM1P09493 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.68■□□□□ 0.26
TPM1P09493 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 AL589739.1-201ENST00000607720 493 ntBASIC16.68■□□□□ 0.26
TPM1P09493 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM1P09493 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 AC107918.4-201ENST00000641966 3141 ntBASIC16.68■□□□□ 0.26
TPM1P09493 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 CETN4P-206ENST00000642099 2168 ntBASIC16.68■□□□□ 0.26
TPM1P09493 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC16.68■□□□□ 0.26
TPM1P09493 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 AP001267.2-201ENST00000532619 2086 ntBASIC16.68■□□□□ 0.26
TPM1P09493 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.68■□□□□ 0.26
TPM1P09493 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM1P09493 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.67■□□□□ 0.26
TPM1P09493 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.67■□□□□ 0.26
TPM1P09493 AC055811.4-201ENST00000624039 1754 ntBASIC16.67■□□□□ 0.26
TPM1P09493 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 AL121723.1-201ENST00000445194 1519 ntBASIC16.67■□□□□ 0.26
TPM1P09493 MIR193BHG-211ENST00000641433 5365 ntBASIC16.67■□□□□ 0.26
TPM1P09493 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM1P09493 AL627223.1-201ENST00000416693 442 ntBASIC16.67■□□□□ 0.26
TPM1P09493 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.67■□□□□ 0.26
TPM1P09493 KRT18P64-201ENST00000434946 1219 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms