Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP88Q99567 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.65■□□□□ 0.42
NUP88Q99567 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 AL023775.1-201ENST00000454907 1746 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
NUP88Q99567 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 MIR1247-201ENST00000408206 136 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 BTBD6P1-201ENST00000412176 1267 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.65■□□□□ 0.42
NUP88Q99567 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 AL591846.1-201ENST00000451736 433 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 COX5BP1-201ENST00000507622 393 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
NUP88Q99567 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP88Q99567 EEF1DP1-201ENST00000585891 896 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
NUP88Q99567 AL096828.3-201ENST00000615354 462 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.65■□□□□ 0.42
NUP88Q99567 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.65■□□□□ 0.42
NUP88Q99567 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
NUP88Q99567 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
NUP88Q99567 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.65■□□□□ 0.42
NUP88Q99567 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
NUP88Q99567 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
NUP88Q99567 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
NUP88Q99567 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
NUP88Q99567 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.64■□□□□ 0.42
NUP88Q99567 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
NUP88Q99567 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.64■□□□□ 0.41
NUP88Q99567 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
NUP88Q99567 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
NUP88Q99567 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.64■□□□□ 0.41
NUP88Q99567 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.64■□□□□ 0.41
NUP88Q99567 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.64■□□□□ 0.41
NUP88Q99567 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
NUP88Q99567 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.64■□□□□ 0.41
NUP88Q99567 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.64■□□□□ 0.41
NUP88Q99567 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.64■□□□□ 0.41
NUP88Q99567 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 AC073413.1-201ENST00000603927 732 ntBASIC17.64■□□□□ 0.41
NUP88Q99567 AC087481.3-201ENST00000602886 1894 ntBASIC17.64■□□□□ 0.41
NUP88Q99567 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NUP88Q99567 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
NUP88Q99567 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.64■□□□□ 0.41
NUP88Q99567 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.64■□□□□ 0.41
NUP88Q99567 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.64■□□□□ 0.41
NUP88Q99567 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP88Q99567 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
NUP88Q99567 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.63■□□□□ 0.41
NUP88Q99567 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.63■□□□□ 0.41
NUP88Q99567 AL137783.1-201ENST00000623494 1896 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.63■□□□□ 0.41
NUP88Q99567 GPAA1P2-201ENST00000417923 928 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 GHSR-202ENST00000427970 912 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.63■□□□□ 0.41
NUP88Q99567 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.63■□□□□ 0.41
NUP88Q99567 DUX4L47-201ENST00000566374 394 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 PPY2P-201ENST00000582808 702 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NUP88Q99567 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms