Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.77■□□□□ 0.11
RFWD3Q6PCD5 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AL138709.1-201ENST00000614840 1693 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC041040.2-201ENST00000622926 2899 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AL645937.2-201ENST00000396808 931 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 GHSR-202ENST00000427970 912 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 C2orf27AP3-201ENST00000434123 579 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC007274.1-201ENST00000439805 662 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 RPL7P3-201ENST00000441388 714 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 KRT90P-201ENST00000549264 1064 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AP005482.1-201ENST00000563722 1273 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC025279.2-201ENST00000569730 653 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AL354718.3-201ENST00000616414 581 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 CR382287.1-201ENST00000623954 586 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 LRRC59-203ENST00000576448 1531 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC117489.1-201ENST00000625169 3217 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 REXO1L4P-201ENST00000605109 1937 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 AC079781.5-202ENST00000641784 3743 ntBASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.76■□□□□ 0.11
RFWD3Q6PCD5 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 HLA-K-203ENST00000430151 1046 ntBASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFWD3Q6PCD5 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms