Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 GPR182-203ENST00000622922 591 ntBASIC13.87□□□□□ -0.19
MSX1P28360 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 AGAP7P-201ENST00000582299 2062 ntBASIC13.87□□□□□ -0.19
MSX1P28360 AGAP14-201ENST00000624701 2060 ntBASIC13.87□□□□□ -0.19
MSX1P28360 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 HYMAI-201ENST00000635591 3347 ntBASIC13.86□□□□□ -0.19
MSX1P28360 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
MSX1P28360 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
MSX1P28360 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX1P28360 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX1P28360 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX1P28360 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX1P28360 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.86□□□□□ -0.19
MSX1P28360 AP001889.1-201ENST00000525414 633 ntBASIC13.86□□□□□ -0.19
MSX1P28360 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 AP000812.2-201ENST00000538934 718 ntBASIC13.86□□□□□ -0.19
MSX1P28360 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX1P28360 DUX4L47-201ENST00000566374 394 ntBASIC13.86□□□□□ -0.19
MSX1P28360 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX1P28360 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX1P28360 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX1P28360 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.85□□□□□ -0.19
MSX1P28360 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.85□□□□□ -0.19
MSX1P28360 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 AL122018.1-201ENST00000446607 2310 ntBASIC13.85□□□□□ -0.19
MSX1P28360 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms