Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SHOX2O60902 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.11■□□□□ 0.01
SHOX2O60902 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.11■□□□□ 0.01
SHOX2O60902 AC117500.6-201ENST00000624871 588 ntBASIC15.11■□□□□ 0.01
SHOX2O60902 AC126335.2-201ENST00000623362 4637 ntBASIC15.11■□□□□ 0.01
SHOX2O60902 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 AL157996.1-201ENST00000624684 2299 ntBASIC15.11■□□□□ 0.01
SHOX2O60902 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC15.11■□□□□ 0.01
SHOX2O60902 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.1■□□□□ 0.01
SHOX2O60902 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.1■□□□□ 0.01
SHOX2O60902 AC140658.5-201ENST00000438532 169 ntBASIC15.1■□□□□ 0.01
SHOX2O60902 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.1■□□□□ 0.01
SHOX2O60902 AC018712.1-201ENST00000455767 687 ntBASIC15.1■□□□□ 0.01
SHOX2O60902 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SHOX2O60902 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.1■□□□□ 0.01
SHOX2O60902 MIR4751-201ENST00000578027 74 ntBASIC15.1■□□□□ 0.01
SHOX2O60902 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.1■□□□□ 0.01
SHOX2O60902 AC074044.1-201ENST00000609673 707 ntBASIC15.1■□□□□ 0.01
SHOX2O60902 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SHOX2O60902 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHOX2O60902 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC15.1■□□□□ 0.01
SHOX2O60902 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC15.09■□□□□ 0.01
SHOX2O60902 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC15.09■□□□□ 0.01
SHOX2O60902 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SHOX2O60902 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.09■□□□□ 0.01
SHOX2O60902 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
SHOX2O60902 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
SHOX2O60902 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.09■□□□□ 0.01
SHOX2O60902 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.09■□□□□ 0.01
SHOX2O60902 AC092910.1-201ENST00000482027 1129 ntBASIC15.09■□□□□ 0.01
SHOX2O60902 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.09■□□□□ 0.01
SHOX2O60902 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.09■□□□□ 0.01
SHOX2O60902 AL138918.1-201ENST00000568306 659 ntBASIC15.09■□□□□ 0.01
SHOX2O60902 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.09■□□□□ 0.01
SHOX2O60902 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.09■□□□□ 0.01
SHOX2O60902 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms