Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 RPL5P21-201ENST00000404620 815 ntBASIC12.17□□□□□ -0.46
HOXA3O43365 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 SLC25A24P2-201ENST00000415059 510 ntBASIC12.17□□□□□ -0.46
HOXA3O43365 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC12.17□□□□□ -0.46
HOXA3O43365 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXA3O43365 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 AKR7A2P1-201ENST00000460134 915 ntBASIC12.17□□□□□ -0.46
HOXA3O43365 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXA3O43365 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 AC244157.2-201ENST00000616239 1006 ntBASIC12.17□□□□□ -0.46
HOXA3O43365 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXA3O43365 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA3O43365 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA3O43365 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
HOXA3O43365 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HOXA3O43365 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXA3O43365 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 KRT8P4-201ENST00000509735 1454 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA3O43365 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 AC138969.2-201ENST00000532739 9932 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 MIR663B-201ENST00000408361 115 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 FNTAP2-201ENST00000430308 634 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA3O43365 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXA3O43365 HSPB1P2-201ENST00000448722 546 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA3O43365 IGHJ2P-201ENST00000454480 60 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 AC091804.1-201ENST00000486888 567 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 SCARNA20.5-201ENST00000516991 142 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC12.16□□□□□ -0.46
HOXA3O43365 RN7SL713P-201ENST00000582127 302 ntBASIC12.16□□□□□ -0.46
HOXA3O43365 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.16□□□□□ -0.46
HOXA3O43365 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC12.16□□□□□ -0.46
HOXA3O43365 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HOXA3O43365 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA3O43365 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA3O43365 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.16□□□□□ -0.46
HOXA3O43365 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA3O43365 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms