Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC19.01■□□□□ 0.63
NPHP1O15259 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
NPHP1O15259 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
NPHP1O15259 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.01■□□□□ 0.63
NPHP1O15259 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC19.01■□□□□ 0.63
NPHP1O15259 EEF1DP6-201ENST00000449232 372 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 AC012618.1-201ENST00000461223 412 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC19.01■□□□□ 0.63
NPHP1O15259 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC19.01■□□□□ 0.63
NPHP1O15259 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.01■□□□□ 0.63
NPHP1O15259 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 AL136301.1-201ENST00000615830 422 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 MIR7845-201ENST00000618396 99 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 AC092127.1-201ENST00000567093 3455 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 AC008132.1-202ENST00000342005 1389 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
NPHP1O15259 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC19.01■□□□□ 0.63
NPHP1O15259 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 PRAL-201ENST00000624952 3286 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
NPHP1O15259 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19■□□□□ 0.63
NPHP1O15259 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC19■□□□□ 0.63
NPHP1O15259 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
NPHP1O15259 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC19■□□□□ 0.63
NPHP1O15259 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 ACTG1P2-201ENST00000415776 1125 ntBASIC19■□□□□ 0.63
NPHP1O15259 AC007274.2-201ENST00000421675 662 ntBASIC19■□□□□ 0.63
NPHP1O15259 ACTG1P11-201ENST00000425411 1125 ntBASIC19■□□□□ 0.63
NPHP1O15259 AC024681.1-201ENST00000521917 487 ntBASIC19■□□□□ 0.63
NPHP1O15259 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC19■□□□□ 0.63
NPHP1O15259 SYT17-208ENST00000568433 812 ntTSL 3 BASIC19■□□□□ 0.63
NPHP1O15259 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC19■□□□□ 0.63
NPHP1O15259 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC19■□□□□ 0.63
NPHP1O15259 SPCS2P2-201ENST00000603270 608 ntBASIC19■□□□□ 0.63
NPHP1O15259 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
NPHP1O15259 AC079336.7-201ENST00000623428 1078 ntBASIC19■□□□□ 0.63
NPHP1O15259 AL805961.1-203ENST00000641078 1258 ntBASIC19■□□□□ 0.63
NPHP1O15259 AC004923.1-202ENST00000642106 209 ntBASIC19■□□□□ 0.63
NPHP1O15259 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC19■□□□□ 0.63
NPHP1O15259 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
NPHP1O15259 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC19■□□□□ 0.63
NPHP1O15259 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
NPHP1O15259 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
NPHP1O15259 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
NPHP1O15259 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
NPHP1O15259 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC19■□□□□ 0.63
NPHP1O15259 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19■□□□□ 0.63
NPHP1O15259 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19■□□□□ 0.63
NPHP1O15259 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPHP1O15259 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
NPHP1O15259 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
NPHP1O15259 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
NPHP1O15259 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
NPHP1O15259 REXO1L5P-201ENST00000622260 2098 ntBASIC18.99■□□□□ 0.63
NPHP1O15259 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
NPHP1O15259 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPHP1O15259 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPHP1O15259 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPHP1O15259 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.99■□□□□ 0.63
NPHP1O15259 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC18.99■□□□□ 0.63
NPHP1O15259 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.99■□□□□ 0.63
NPHP1O15259 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPHP1O15259 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NPHP1O15259 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
NPHP1O15259 LDHBP1-201ENST00000455730 1119 ntBASIC18.99■□□□□ 0.63
NPHP1O15259 TUBB8P8-201ENST00000458717 1058 ntBASIC18.99■□□□□ 0.63
NPHP1O15259 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.99■□□□□ 0.63
NPHP1O15259 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms