Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 KRT8P4-201ENST00000509735 1454 ntBASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 RN7SKP230-201ENST00000365642 335 ntBASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 RN7SL219P-201ENST00000582872 296 ntBASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 ACE3P-201ENST00000423435 1973 ntBASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 REXO1L6P-201ENST00000603433 1515 ntBASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4AQ9BY43 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 POM121L10P-201ENST00000436994 1285 ntBASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 GOLGA2P4-201ENST00000441462 777 ntBASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AL035414.1-201ENST00000451327 857 ntBASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AP003171.2-201ENST00000528208 925 ntBASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 MIR4741-201ENST00000579822 90 ntBASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AC091271.1-201ENST00000611877 1162 ntBASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 AC126177.1-201ENST00000547829 2218 ntBASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms