Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 HLA-K-203ENST00000430151 1046 ntBASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 KLF2P4-201ENST00000451959 1225 ntBASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 AC025279.2-201ENST00000569730 653 ntBASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 GNRHR2-203ENST00000581100 1187 ntBASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 AC244669.2-201ENST00000612320 853 ntBASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PTCHD1Q96NR3 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 AGAP7P-201ENST00000582299 2062 ntBASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 AGAP14-201ENST00000624701 2060 ntBASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PTCHD1Q96NR3 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 MIR1909-201ENST00000411312 80 ntBASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 CTBP2P5-201ENST00000454986 1264 ntBASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AC104989.1-201ENST00000519711 778 ntBASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AC132938.4-201ENST00000623835 848 ntBASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PTCHD1Q96NR3 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 AL138709.1-201ENST00000614840 1693 ntBASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms