Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AGAP7P-201ENST00000582299 2062 ntBASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 AGAP14-201ENST00000624701 2060 ntBASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 SALL4P5-201ENST00000419001 1760 ntBASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 KRT8P13-201ENST00000463294 1010 ntBASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 AP001258.2-201ENST00000529891 490 ntBASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 LINC00528-201ENST00000600723 2160 ntBASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 AC126177.1-201ENST00000547829 2218 ntBASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC60Q8IWA6 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TLE1P1-201ENST00000422965 589 ntBASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms