Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC11.72□□□□□ -0.53
HOXD3P31249 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC11.72□□□□□ -0.53
HOXD3P31249 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.72□□□□□ -0.53
HOXD3P31249 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC11.72□□□□□ -0.53
HOXD3P31249 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.72□□□□□ -0.53
HOXD3P31249 MIR4741-201ENST00000579822 90 ntBASIC11.72□□□□□ -0.53
HOXD3P31249 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 AC008687.7-202ENST00000637404 953 ntBASIC11.72□□□□□ -0.53
HOXD3P31249 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 REXO1L4P-201ENST00000605109 1937 ntBASIC11.72□□□□□ -0.53
HOXD3P31249 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC11.71□□□□□ -0.53
HOXD3P31249 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.71□□□□□ -0.53
HOXD3P31249 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC11.71□□□□□ -0.53
HOXD3P31249 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HOXD3P31249 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC11.71□□□□□ -0.53
HOXD3P31249 AC138035.3-201ENST00000622706 2791 ntBASIC11.71□□□□□ -0.53
HOXD3P31249 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.53
HOXD3P31249 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXD3P31249 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC11.71□□□□□ -0.53
HOXD3P31249 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
HOXD3P31249 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
HOXD3P31249 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC11.71□□□□□ -0.53
HOXD3P31249 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXD3P31249 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXD3P31249 C2orf69P2-201ENST00000562032 1123 ntBASIC11.71□□□□□ -0.53
HOXD3P31249 IGHV3OR16-16-201ENST00000563644 343 ntBASIC11.71□□□□□ -0.53
HOXD3P31249 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXD3P31249 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXD3P31249 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC11.71□□□□□ -0.53
HOXD3P31249 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC11.71□□□□□ -0.53
HOXD3P31249 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
HOXD3P31249 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXD3P31249 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC11.71□□□□□ -0.53
HOXD3P31249 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXD3P31249 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
HOXD3P31249 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
HOXD3P31249 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC11.71□□□□□ -0.54
HOXD3P31249 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 OR2I1P-209ENST00000641730 5365 ntBASIC11.71□□□□□ -0.54
HOXD3P31249 AC103702.1-201ENST00000548801 2630 ntBASIC11.71□□□□□ -0.54
HOXD3P31249 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC11.71□□□□□ -0.54
HOXD3P31249 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXD3P31249 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXD3P31249 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXD3P31249 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXD3P31249 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
HOXD3P31249 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC11.7□□□□□ -0.54
HOXD3P31249 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms