Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC13.19□□□□□ -0.3
COL8A1P27658 AC018463.1-201ENST00000456674 917 ntBASIC13.19□□□□□ -0.3
COL8A1P27658 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC13.19□□□□□ -0.3
COL8A1P27658 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 SNORD3B-2-202ENST00000571722 791 ntBASIC13.19□□□□□ -0.3
COL8A1P27658 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 AC005324.6-201ENST00000587972 613 ntBASIC13.19□□□□□ -0.3
COL8A1P27658 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.19□□□□□ -0.3
COL8A1P27658 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.19□□□□□ -0.3
COL8A1P27658 ETV2-207ENST00000619399 994 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 AL162426.1-201ENST00000624141 743 ntBASIC13.19□□□□□ -0.3
COL8A1P27658 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC13.19□□□□□ -0.3
COL8A1P27658 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
COL8A1P27658 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 RNF216P1-203ENST00000404404 2427 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC13.18□□□□□ -0.3
COL8A1P27658 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 Z69890.1-201ENST00000382990 339 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.18□□□□□ -0.3
COL8A1P27658 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 AL136309.1-201ENST00000403917 691 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.18□□□□□ -0.3
COL8A1P27658 AGPAT5P1-201ENST00000455855 1019 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 RN7SL67P-201ENST00000492147 296 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC13.18□□□□□ -0.3
COL8A1P27658 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC13.18□□□□□ -0.3
COL8A1P27658 AL031713.1-201ENST00000564813 661 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 SAMD11P1-201ENST00000571429 661 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 EIF5AP2-201ENST00000585668 1047 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 RPL17P45-201ENST00000586289 509 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC13.18□□□□□ -0.3
COL8A1P27658 AC026790.2-201ENST00000606282 430 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms