Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
COL5A3P25940 AC012073.1-201ENST00000606114 1108 ntBASIC18.4■□□□□ 0.54
COL5A3P25940 AL118522.1-201ENST00000611368 560 ntBASIC18.4■□□□□ 0.54
COL5A3P25940 PPIA-210ENST00000620047 827 ntTSL 5 BASIC18.4■□□□□ 0.54
COL5A3P25940 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC18.4■□□□□ 0.54
COL5A3P25940 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A3P25940 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL5A3P25940 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC18.4■□□□□ 0.54
COL5A3P25940 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL5A3P25940 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL5A3P25940 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.39■□□□□ 0.54
COL5A3P25940 PRAL-201ENST00000624952 3286 ntBASIC18.39■□□□□ 0.54
COL5A3P25940 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 TEKT4P2-202ENST00000559466 1312 ntBASIC18.39■□□□□ 0.53
COL5A3P25940 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL5A3P25940 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC18.39■□□□□ 0.53
COL5A3P25940 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC18.39■□□□□ 0.53
COL5A3P25940 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC18.39■□□□□ 0.53
COL5A3P25940 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC18.39■□□□□ 0.53
COL5A3P25940 AC024293.1-201ENST00000467930 498 ntBASIC18.39■□□□□ 0.53
COL5A3P25940 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
COL5A3P25940 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.39■□□□□ 0.53
COL5A3P25940 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC18.39■□□□□ 0.53
COL5A3P25940 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 AL591471.1-201ENST00000621855 229 ntBASIC18.39■□□□□ 0.53
COL5A3P25940 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC18.39■□□□□ 0.53
COL5A3P25940 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC18.39■□□□□ 0.53
COL5A3P25940 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL5A3P25940 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL5A3P25940 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A3P25940 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A3P25940 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL5A3P25940 AC067931.2-201ENST00000623655 2003 ntBASIC18.38■□□□□ 0.53
COL5A3P25940 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 BAK1P1-201ENST00000317045 636 ntBASIC18.38■□□□□ 0.53
COL5A3P25940 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC18.38■□□□□ 0.53
COL5A3P25940 OR2A1-AS1-210ENST00000496968 531 ntBASIC18.38■□□□□ 0.53
COL5A3P25940 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC18.38■□□□□ 0.53
COL5A3P25940 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 OR5BD1P-201ENST00000532527 817 ntBASIC18.38■□□□□ 0.53
COL5A3P25940 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A3P25940 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.38■□□□□ 0.53
COL5A3P25940 TRMT112P3-201ENST00000580149 358 ntBASIC18.38■□□□□ 0.53
COL5A3P25940 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A3P25940 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
COL5A3P25940 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
COL5A3P25940 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.38■□□□□ 0.53
COL5A3P25940 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A3P25940 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A3P25940 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A3P25940 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL5A3P25940 AC098934.1-203ENST00000442868 1262 ntBASIC18.37■□□□□ 0.53
COL5A3P25940 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL5A3P25940 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 KRT8P2-201ENST00000556193 944 ntBASIC18.37■□□□□ 0.53
COL5A3P25940 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC18.37■□□□□ 0.53
COL5A3P25940 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC18.37■□□□□ 0.53
COL5A3P25940 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.37■□□□□ 0.53
COL5A3P25940 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC18.37■□□□□ 0.53
COL5A3P25940 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms