Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.86□□□□□ -0.35
USF1P22415 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 RPS3-201ENST00000278572 907 ntTSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
USF1P22415 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 AGER-203ENST00000375065 665 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
USF1P22415 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 MIR1202-201ENST00000408529 83 ntBASIC12.86□□□□□ -0.35
USF1P22415 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 NUS1P3-201ENST00000423502 862 ntBASIC12.86□□□□□ -0.35
USF1P22415 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 AC114812.1-204ENST00000449669 728 ntBASIC12.86□□□□□ -0.35
USF1P22415 AC104306.2-201ENST00000451877 341 ntBASIC12.86□□□□□ -0.35
USF1P22415 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC12.86□□□□□ -0.35
USF1P22415 ARTN-209ENST00000479128 471 ntTSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 TPI1-206ENST00000488464 791 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC12.86□□□□□ -0.35
USF1P22415 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 C2orf69P2-201ENST00000562032 1123 ntBASIC12.86□□□□□ -0.35
USF1P22415 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC12.86□□□□□ -0.35
USF1P22415 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.86□□□□□ -0.35
USF1P22415 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 AL138709.1-201ENST00000614840 1693 ntBASIC12.86□□□□□ -0.35
USF1P22415 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
USF1P22415 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
USF1P22415 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
USF1P22415 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
USF1P22415 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.85□□□□□ -0.35
USF1P22415 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
USF1P22415 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC12.85□□□□□ -0.35
USF1P22415 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.85□□□□□ -0.35
USF1P22415 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
USF1P22415 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
USF1P22415 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
USF1P22415 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.85□□□□□ -0.35
USF1P22415 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
USF1P22415 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms