Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH4O15457 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
MSH4O15457 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH4O15457 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 AC018529.2-202ENST00000611482 3087 ntBASIC16.87■□□□□ 0.29
MSH4O15457 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.87■□□□□ 0.29
MSH4O15457 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.87■□□□□ 0.29
MSH4O15457 MIR1908-201ENST00000410394 80 ntBASIC16.87■□□□□ 0.29
MSH4O15457 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 HIST2H2BB-201ENST00000449108 381 ntBASIC16.87■□□□□ 0.29
MSH4O15457 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 FAM86HP-204ENST00000513466 959 ntBASIC16.87■□□□□ 0.29
MSH4O15457 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.87■□□□□ 0.29
MSH4O15457 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.87■□□□□ 0.29
MSH4O15457 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.87■□□□□ 0.29
MSH4O15457 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.87■□□□□ 0.29
MSH4O15457 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.87■□□□□ 0.29
MSH4O15457 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MSH4O15457 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.87■□□□□ 0.29
MSH4O15457 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.87■□□□□ 0.29
MSH4O15457 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSH4O15457 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
MSH4O15457 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.86■□□□□ 0.29
MSH4O15457 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
MSH4O15457 GOLGA2P4-201ENST00000441462 777 ntBASIC16.86■□□□□ 0.29
MSH4O15457 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 AC131206.1-201ENST00000538078 1211 ntBASIC16.86■□□□□ 0.29
MSH4O15457 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.86■□□□□ 0.29
MSH4O15457 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.86■□□□□ 0.29
MSH4O15457 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 EEF1DP1-201ENST00000585891 896 ntBASIC16.86■□□□□ 0.29
MSH4O15457 AL358472.3-201ENST00000608147 415 ntBASIC16.86■□□□□ 0.29
MSH4O15457 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
MSH4O15457 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.86■□□□□ 0.29
MSH4O15457 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
MSH4O15457 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.86■□□□□ 0.29
MSH4O15457 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
MSH4O15457 FGD5P1-202ENST00000614866 2498 ntBASIC16.86■□□□□ 0.29
MSH4O15457 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSH4O15457 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms