Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SPENQ96T58 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SPENQ96T58 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.99■□□□□ 0.95
SPENQ96T58 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.99■□□□□ 0.95
SPENQ96T58 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SPENQ96T58 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.98■□□□□ 0.95
SPENQ96T58 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.98■□□□□ 0.95
SPENQ96T58 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.98■□□□□ 0.95
SPENQ96T58 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SPENQ96T58 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SPENQ96T58 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.98■□□□□ 0.95
SPENQ96T58 IRS3P-201ENST00000223076 1006 ntBASIC20.98■□□□□ 0.95
SPENQ96T58 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.98■□□□□ 0.95
SPENQ96T58 AC004448.1-201ENST00000458332 883 ntBASIC20.98■□□□□ 0.95
SPENQ96T58 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.98■□□□□ 0.95
SPENQ96T58 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SPENQ96T58 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SPENQ96T58 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SPENQ96T58 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SPENQ96T58 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SPENQ96T58 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.96■□□□□ 0.95
SPENQ96T58 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SPENQ96T58 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SPENQ96T58 YBX1P1-201ENST00000445822 960 ntBASIC20.96■□□□□ 0.95
SPENQ96T58 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.96■□□□□ 0.95
SPENQ96T58 AC022517.1-201ENST00000592429 346 ntBASIC20.96■□□□□ 0.95
SPENQ96T58 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
SPENQ96T58 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SPENQ96T58 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SPENQ96T58 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.96■□□□□ 0.95
SPENQ96T58 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SPENQ96T58 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SPENQ96T58 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SPENQ96T58 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.95■□□□□ 0.94
SPENQ96T58 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.95■□□□□ 0.94
SPENQ96T58 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SPENQ96T58 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.95■□□□□ 0.94
SPENQ96T58 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.95■□□□□ 0.94
SPENQ96T58 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SPENQ96T58 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.95■□□□□ 0.94
SPENQ96T58 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SPENQ96T58 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPENQ96T58 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.94■□□□□ 0.94
SPENQ96T58 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SPENQ96T58 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPENQ96T58 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SPENQ96T58 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.94■□□□□ 0.94
SPENQ96T58 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.94■□□□□ 0.94
SPENQ96T58 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.94■□□□□ 0.94
SPENQ96T58 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.94■□□□□ 0.94
SPENQ96T58 AC131274.2-201ENST00000580697 1507 ntBASIC20.94■□□□□ 0.94
SPENQ96T58 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPENQ96T58 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPENQ96T58 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPENQ96T58 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SPENQ96T58 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.93■□□□□ 0.94
SPENQ96T58 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SPENQ96T58 AC010501.1-201ENST00000606270 1962 ntBASIC20.93■□□□□ 0.94
SPENQ96T58 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.93■□□□□ 0.94
SPENQ96T58 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SPENQ96T58 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.93■□□□□ 0.94
SPENQ96T58 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SPENQ96T58 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.93■□□□□ 0.94
SPENQ96T58 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.92■□□□□ 0.94
SPENQ96T58 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SPENQ96T58 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SPENQ96T58 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.92■□□□□ 0.94
SPENQ96T58 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SPENQ96T58 RAP2CP1-201ENST00000605103 478 ntBASIC20.92■□□□□ 0.94
SPENQ96T58 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SPENQ96T58 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.92■□□□□ 0.94
SPENQ96T58 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SPENQ96T58 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.91■□□□□ 0.94
SPENQ96T58 KRT18P5-201ENST00000436075 1291 ntBASIC20.91■□□□□ 0.94
SPENQ96T58 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SPENQ96T58 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SPENQ96T58 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.91■□□□□ 0.94
SPENQ96T58 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SPENQ96T58 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.91■□□□□ 0.94
SPENQ96T58 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SPENQ96T58 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
SPENQ96T58 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SPENQ96T58 AC097639.1-201ENST00000565519 1891 ntBASIC20.9■□□□□ 0.94
SPENQ96T58 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.9■□□□□ 0.94
SPENQ96T58 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.9■□□□□ 0.94
SPENQ96T58 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SPENQ96T58 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.9■□□□□ 0.94
SPENQ96T58 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SPENQ96T58 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SPENQ96T58 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SPENQ96T58 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
SPENQ96T58 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SPENQ96T58 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SPENQ96T58 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.89■□□□□ 0.94
SPENQ96T58 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SPENQ96T58 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.89■□□□□ 0.93
SPENQ96T58 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.89■□□□□ 0.93
SPENQ96T58 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SPENQ96T58 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.89■□□□□ 0.93
SPENQ96T58 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms