Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
TRIM43Q96BQ3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43Q96BQ3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43Q96BQ3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.37■■□□□ 1.65
TRIM43Q96BQ3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43Q96BQ3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 AC097639.1-201ENST00000565519 1891 ntBASIC25.36■■□□□ 1.65
TRIM43Q96BQ3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.35■■□□□ 1.65
TRIM43Q96BQ3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
TRIM43Q96BQ3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
TRIM43Q96BQ3 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.35■■□□□ 1.65
TRIM43Q96BQ3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.35■■□□□ 1.65
TRIM43Q96BQ3 SLC47A1P1-202ENST00000449666 945 ntBASIC25.35■■□□□ 1.65
TRIM43Q96BQ3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
TRIM43Q96BQ3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM43Q96BQ3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.34■■□□□ 1.65
TRIM43Q96BQ3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
TRIM43Q96BQ3 BX842568.3-201ENST00000418104 571 ntBASIC25.34■■□□□ 1.65
TRIM43Q96BQ3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.34■■□□□ 1.65
TRIM43Q96BQ3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM43Q96BQ3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 AC096887.2-201ENST00000623443 1957 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 AC006455.2-201ENST00000429931 906 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 YBX1P1-201ENST00000445822 960 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4L2-201ENST00000561772 1275 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4L6-201ENST00000626483 1275 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4L1-201ENST00000627662 1275 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4L8-201ENST00000629013 1275 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4L3-201ENST00000630187 1275 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4L7-201ENST00000630678 1275 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 DUX4L5-201ENST00000630834 1275 ntBASIC25.33■■□□□ 1.65
TRIM43Q96BQ3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.32■■□□□ 1.64
TRIM43Q96BQ3 AC004911.1-201ENST00000416316 871 ntBASIC25.32■■□□□ 1.64
TRIM43Q96BQ3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.32■■□□□ 1.64
TRIM43Q96BQ3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM43Q96BQ3 AC131274.2-201ENST00000580697 1507 ntBASIC25.32■■□□□ 1.64
TRIM43Q96BQ3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 ID1-201ENST00000376105 1233 ntBASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 C17orf82-201ENST00000623772 1530 ntBASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43Q96BQ3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
TRIM43Q96BQ3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
TRIM43Q96BQ3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 AC241377.3-202ENST00000626088 1088 ntBASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 AC241585.3-202ENST00000628937 1088 ntBASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 AC245100.8-202ENST00000629247 1058 ntBASIC25.28■■□□□ 1.64
TRIM43Q96BQ3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 MIR3181-201ENST00000578512 73 ntBASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM43Q96BQ3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.26■■□□□ 1.63
TRIM43Q96BQ3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM43Q96BQ3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM43Q96BQ3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM43Q96BQ3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.26■■□□□ 1.63
TRIM43Q96BQ3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms