Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC105265.2-201ENST00000467189 838 ntBASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 AL136967.2-201ENST00000623968 743 ntBASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.63■■■□□ 2.49
USHBP1Q8N6Y0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.63■■■□□ 2.49
USHBP1Q8N6Y0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC30.63■■■□□ 2.49
USHBP1Q8N6Y0 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC30.63■■■□□ 2.49
USHBP1Q8N6Y0 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC30.63■■■□□ 2.49
USHBP1Q8N6Y0 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
USHBP1Q8N6Y0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC30.62■■■□□ 2.49
USHBP1Q8N6Y0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USHBP1Q8N6Y0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC30.62■■■□□ 2.49
USHBP1Q8N6Y0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC30.62■■■□□ 2.49
USHBP1Q8N6Y0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
USHBP1Q8N6Y0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
USHBP1Q8N6Y0 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC30.61■■■□□ 2.49
USHBP1Q8N6Y0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USHBP1Q8N6Y0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC30.61■■■□□ 2.49
USHBP1Q8N6Y0 DUSP8P4-201ENST00000399538 1761 ntBASIC30.61■■■□□ 2.49
USHBP1Q8N6Y0 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.61■■■□□ 2.49
USHBP1Q8N6Y0 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.61■■■□□ 2.49
USHBP1Q8N6Y0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 AP001330.3-201ENST00000520123 633 ntBASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
USHBP1Q8N6Y0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC30.59■■■□□ 2.49
USHBP1Q8N6Y0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USHBP1Q8N6Y0 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
USHBP1Q8N6Y0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USHBP1Q8N6Y0 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USHBP1Q8N6Y0 MIR939-201ENST00000401314 82 ntBASIC30.58■■■□□ 2.49
USHBP1Q8N6Y0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
USHBP1Q8N6Y0 MIR4767-201ENST00000582827 78 ntBASIC30.58■■■□□ 2.49
USHBP1Q8N6Y0 MIR6089-201ENST00000616698 64 ntBASIC30.58■■■□□ 2.49
USHBP1Q8N6Y0 AC091060.1-201ENST00000623524 1766 ntBASIC30.57■■■□□ 2.48
USHBP1Q8N6Y0 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
USHBP1Q8N6Y0 SERBP1P1-201ENST00000396021 1160 ntBASIC30.57■■■□□ 2.48
USHBP1Q8N6Y0 AC099791.2-201ENST00000605725 427 ntBASIC30.57■■■□□ 2.48
USHBP1Q8N6Y0 SYT6-210ENST00000641643 1587 ntBASIC30.57■■■□□ 2.48
USHBP1Q8N6Y0 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
USHBP1Q8N6Y0 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
USHBP1Q8N6Y0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
USHBP1Q8N6Y0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
USHBP1Q8N6Y0 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
USHBP1Q8N6Y0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC30.56■■■□□ 2.48
USHBP1Q8N6Y0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.56■■■□□ 2.48
USHBP1Q8N6Y0 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC30.56■■■□□ 2.48
USHBP1Q8N6Y0 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 MAG-206ENST00000597035 542 ntTSL 4 BASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 AC009102.2-201ENST00000606772 1639 ntBASIC30.55■■■□□ 2.48
USHBP1Q8N6Y0 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USHBP1Q8N6Y0 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30.53■■■□□ 2.48
USHBP1Q8N6Y0 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC30.53■■■□□ 2.48
USHBP1Q8N6Y0 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
USHBP1Q8N6Y0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.53■■■□□ 2.48
USHBP1Q8N6Y0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USHBP1Q8N6Y0 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
USHBP1Q8N6Y0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 LSR-205ENST00000427250 1606 ntTSL 2 BASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 AC092666.2-201ENST00000613287 246 ntBASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.52■■■□□ 2.48
USHBP1Q8N6Y0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
USHBP1Q8N6Y0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
USHBP1Q8N6Y0 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
USHBP1Q8N6Y0 PTCHD3P2-201ENST00000424937 1205 ntBASIC30.51■■■□□ 2.47
USHBP1Q8N6Y0 STK32C-205ENST00000456004 607 ntTSL 2 BASIC30.51■■■□□ 2.47
USHBP1Q8N6Y0 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
USHBP1Q8N6Y0 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
USHBP1Q8N6Y0 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 DUX4L19-201ENST00000557448 1267 ntBASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
USHBP1Q8N6Y0 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
USHBP1Q8N6Y0 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC30.49■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms