Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.34■■□□□ 1.01
C9orf40Q8IXQ3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
C9orf40Q8IXQ3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
C9orf40Q8IXQ3 LINC01124-201ENST00000409786 2117 ntBASIC21.34■■□□□ 1.01
C9orf40Q8IXQ3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 KRT16P3-201ENST00000439127 1283 ntBASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 AC010997.5-201ENST00000609182 354 ntBASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
C9orf40Q8IXQ3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.33■■□□□ 1
C9orf40Q8IXQ3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
C9orf40Q8IXQ3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
C9orf40Q8IXQ3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
C9orf40Q8IXQ3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.32■■□□□ 1
C9orf40Q8IXQ3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
C9orf40Q8IXQ3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.32■■□□□ 1
C9orf40Q8IXQ3 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.32■■□□□ 1
C9orf40Q8IXQ3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.32■■□□□ 1
C9orf40Q8IXQ3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.31■■□□□ 1
C9orf40Q8IXQ3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 AL161729.1-201ENST00000604104 1402 ntBASIC21.3■■□□□ 1
C9orf40Q8IXQ3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
C9orf40Q8IXQ3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 MIR6722-201ENST00000617286 78 ntBASIC21.29■■□□□ 1
C9orf40Q8IXQ3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
C9orf40Q8IXQ3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 LINC00543-201ENST00000567234 1845 ntBASIC21.28■■□□□ 1
C9orf40Q8IXQ3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
C9orf40Q8IXQ3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.27■■□□□ 1
C9orf40Q8IXQ3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.27■■□□□ 1
C9orf40Q8IXQ3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.27■■□□□ 1
C9orf40Q8IXQ3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
C9orf40Q8IXQ3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.27■■□□□ 1
C9orf40Q8IXQ3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.27■■□□□ 1
C9orf40Q8IXQ3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
C9orf40Q8IXQ3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.27■□□□□ 0.99
C9orf40Q8IXQ3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.26■□□□□ 0.99
C9orf40Q8IXQ3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
C9orf40Q8IXQ3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
C9orf40Q8IXQ3 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.26■□□□□ 0.99
C9orf40Q8IXQ3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.26■□□□□ 0.99
C9orf40Q8IXQ3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
C9orf40Q8IXQ3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 AC141586.4-201ENST00000624558 1573 ntBASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
C9orf40Q8IXQ3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 MIR6724-1-201ENST00000616420 92 ntBASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 MIR6724-2-201ENST00000616483 92 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms