Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.09■□□□□ 0.65
CSPG4Q6UVK1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CSPG4Q6UVK1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CSPG4Q6UVK1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CSPG4Q6UVK1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.08■□□□□ 0.65
CSPG4Q6UVK1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CSPG4Q6UVK1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CSPG4Q6UVK1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 AC004448.1-201ENST00000458332 883 ntBASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CSPG4Q6UVK1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4L2-201ENST00000561772 1275 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4L6-201ENST00000626483 1275 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4L1-201ENST00000627662 1275 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4L8-201ENST00000629013 1275 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4L3-201ENST00000630187 1275 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4L7-201ENST00000630678 1275 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 DUX4L5-201ENST00000630834 1275 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 AC009102.2-201ENST00000606772 1639 ntBASIC19.07■□□□□ 0.64
CSPG4Q6UVK1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 AL031602.1-201ENST00000633169 911 ntBASIC19.06■□□□□ 0.64
CSPG4Q6UVK1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CSPG4Q6UVK1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CSPG4Q6UVK1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CSPG4Q6UVK1 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.05■□□□□ 0.64
CSPG4Q6UVK1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.05■□□□□ 0.64
CSPG4Q6UVK1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.05■□□□□ 0.64
CSPG4Q6UVK1 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CSPG4Q6UVK1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CSPG4Q6UVK1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CSPG4Q6UVK1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CSPG4Q6UVK1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
CSPG4Q6UVK1 AC099791.1-201ENST00000416440 715 ntBASIC19.04■□□□□ 0.64
CSPG4Q6UVK1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CSPG4Q6UVK1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CSPG4Q6UVK1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 AC099791.2-201ENST00000605725 427 ntBASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CSPG4Q6UVK1 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 AC142086.6-201ENST00000621154 1765 ntBASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 SLC47A1P1-202ENST00000449666 945 ntBASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.02■□□□□ 0.64
CSPG4Q6UVK1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CSPG4Q6UVK1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CSPG4Q6UVK1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19■□□□□ 0.63
CSPG4Q6UVK1 AC233992.3-201ENST00000607491 485 ntBASIC19■□□□□ 0.63
CSPG4Q6UVK1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CSPG4Q6UVK1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CSPG4Q6UVK1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CSPG4Q6UVK1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CSPG4Q6UVK1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CSPG4Q6UVK1 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19■□□□□ 0.63
CSPG4Q6UVK1 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19■□□□□ 0.63
CSPG4Q6UVK1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
CSPG4Q6UVK1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CSPG4Q6UVK1 C17orf82-201ENST00000623772 1530 ntBASIC19■□□□□ 0.63
CSPG4Q6UVK1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms