Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
H3F3AP84243 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
H3F3AP84243 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
H3F3AP84243 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
H3F3AP84243 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
H3F3AP84243 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.58■□□□□ 0.89
H3F3AP84243 AC239859.2-201ENST00000444165 318 ntBASIC20.58■□□□□ 0.89
H3F3AP84243 AC004448.1-201ENST00000458332 883 ntBASIC20.58■□□□□ 0.89
H3F3AP84243 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.58■□□□□ 0.89
H3F3AP84243 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
H3F3AP84243 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
H3F3AP84243 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
H3F3AP84243 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
H3F3AP84243 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
H3F3AP84243 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
H3F3AP84243 KRT125P-201ENST00000546827 989 ntBASIC20.57■□□□□ 0.88
H3F3AP84243 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
H3F3AP84243 AC093323.1-202ENST00000635031 2045 ntBASIC20.56■□□□□ 0.88
H3F3AP84243 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.56■□□□□ 0.88
H3F3AP84243 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.56■□□□□ 0.88
H3F3AP84243 SNX5-217ENST00000606557 1087 ntBASIC20.56■□□□□ 0.88
H3F3AP84243 AC004812.2-201ENST00000611079 2094 ntBASIC20.56■□□□□ 0.88
H3F3AP84243 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
H3F3AP84243 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
H3F3AP84243 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
H3F3AP84243 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
H3F3AP84243 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
H3F3AP84243 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
H3F3AP84243 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.55■□□□□ 0.88
H3F3AP84243 MIR4787-201ENST00000607364 84 ntBASIC20.55■□□□□ 0.88
H3F3AP84243 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.55■□□□□ 0.88
H3F3AP84243 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
H3F3AP84243 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
H3F3AP84243 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.54■□□□□ 0.88
H3F3AP84243 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.54■□□□□ 0.88
H3F3AP84243 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 AC092028.1-203ENST00000608262 953 ntBASIC20.54■□□□□ 0.88
H3F3AP84243 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.54■□□□□ 0.88
H3F3AP84243 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
H3F3AP84243 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
H3F3AP84243 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.53■□□□□ 0.88
H3F3AP84243 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
H3F3AP84243 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
H3F3AP84243 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.53■□□□□ 0.88
H3F3AP84243 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.53■□□□□ 0.88
H3F3AP84243 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
H3F3AP84243 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
H3F3AP84243 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
H3F3AP84243 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
H3F3AP84243 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
H3F3AP84243 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
H3F3AP84243 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
H3F3AP84243 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
H3F3AP84243 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.53■□□□□ 0.88
H3F3AP84243 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
H3F3AP84243 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
H3F3AP84243 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
H3F3AP84243 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.52■□□□□ 0.88
H3F3AP84243 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.52■□□□□ 0.88
H3F3AP84243 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
H3F3AP84243 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.52■□□□□ 0.88
H3F3AP84243 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
H3F3AP84243 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
H3F3AP84243 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
H3F3AP84243 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.51■□□□□ 0.87
H3F3AP84243 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.51■□□□□ 0.87
H3F3AP84243 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.51■□□□□ 0.87
H3F3AP84243 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.51■□□□□ 0.87
H3F3AP84243 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.51■□□□□ 0.87
H3F3AP84243 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
H3F3AP84243 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
H3F3AP84243 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
H3F3AP84243 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
H3F3AP84243 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.5■□□□□ 0.87
H3F3AP84243 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.5■□□□□ 0.87
H3F3AP84243 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.5■□□□□ 0.87
H3F3AP84243 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
H3F3AP84243 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
H3F3AP84243 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
H3F3AP84243 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms