Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CCNA1P78396 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC26.43■■□□□ 1.82
CCNA1P78396 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
CCNA1P78396 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
CCNA1P78396 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.43■■□□□ 1.82
CCNA1P78396 AC099791.2-201ENST00000605725 427 ntBASIC26.43■■□□□ 1.82
CCNA1P78396 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC26.43■■□□□ 1.82
CCNA1P78396 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCNA1P78396 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.42■■□□□ 1.82
CCNA1P78396 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCNA1P78396 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
CCNA1P78396 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.42■■□□□ 1.82
CCNA1P78396 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCNA1P78396 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCNA1P78396 RASA4CP-201ENST00000424092 1398 ntBASIC26.42■■□□□ 1.82
CCNA1P78396 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCNA1P78396 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
CCNA1P78396 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCNA1P78396 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCNA1P78396 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCNA1P78396 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC26.41■■□□□ 1.82
CCNA1P78396 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
CCNA1P78396 STOX2-205ENST00000513034 807 ntTSL 3 BASIC26.41■■□□□ 1.82
CCNA1P78396 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCNA1P78396 AC027682.1-201ENST00000562846 899 ntBASIC26.41■■□□□ 1.82
CCNA1P78396 AC011298.3-201ENST00000615796 283 ntBASIC26.41■■□□□ 1.82
CCNA1P78396 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCNA1P78396 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCNA1P78396 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCNA1P78396 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.4■■□□□ 1.82
CCNA1P78396 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCNA1P78396 PTCHD3P2-201ENST00000424937 1205 ntBASIC26.4■■□□□ 1.82
CCNA1P78396 CA15P2-201ENST00000611168 834 ntBASIC26.4■■□□□ 1.82
CCNA1P78396 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCNA1P78396 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCNA1P78396 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.4■■□□□ 1.82
CCNA1P78396 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CCNA1P78396 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
CCNA1P78396 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
CCNA1P78396 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CCNA1P78396 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC26.39■■□□□ 1.82
CCNA1P78396 MIR6821-201ENST00000617625 74 ntBASIC26.39■■□□□ 1.82
CCNA1P78396 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
CCNA1P78396 AL022069.1-201ENST00000568025 1636 ntBASIC26.39■■□□□ 1.81
CCNA1P78396 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCNA1P78396 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CCNA1P78396 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC26.38■■□□□ 1.81
CCNA1P78396 MAG-206ENST00000597035 542 ntTSL 4 BASIC26.38■■□□□ 1.81
CCNA1P78396 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CCNA1P78396 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CCNA1P78396 AC009102.2-201ENST00000606772 1639 ntBASIC26.37■■□□□ 1.81
CCNA1P78396 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.37■■□□□ 1.81
CCNA1P78396 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCNA1P78396 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.37■■□□□ 1.81
CCNA1P78396 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCNA1P78396 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCNA1P78396 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCNA1P78396 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.36■■□□□ 1.81
CCNA1P78396 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC26.36■■□□□ 1.81
CCNA1P78396 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC26.36■■□□□ 1.81
CCNA1P78396 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC26.36■■□□□ 1.81
CCNA1P78396 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC26.36■■□□□ 1.81
CCNA1P78396 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC26.36■■□□□ 1.81
CCNA1P78396 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCNA1P78396 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.36■■□□□ 1.81
CCNA1P78396 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCNA1P78396 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
CCNA1P78396 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
CCNA1P78396 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.35■■□□□ 1.81
CCNA1P78396 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCNA1P78396 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCNA1P78396 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCNA1P78396 AC097381.1-201ENST00000429019 1296 ntBASIC26.35■■□□□ 1.81
CCNA1P78396 AC241377.3-202ENST00000626088 1088 ntBASIC26.35■■□□□ 1.81
CCNA1P78396 AC241585.3-202ENST00000628937 1088 ntBASIC26.35■■□□□ 1.81
CCNA1P78396 AC245100.8-202ENST00000629247 1058 ntBASIC26.35■■□□□ 1.81
CCNA1P78396 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.35■■□□□ 1.81
CCNA1P78396 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.34■■□□□ 1.81
CCNA1P78396 MIR6089-201ENST00000616698 64 ntBASIC26.34■■□□□ 1.81
CCNA1P78396 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.34■■□□□ 1.81
CCNA1P78396 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCNA1P78396 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
CCNA1P78396 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.33■■□□□ 1.81
CCNA1P78396 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCNA1P78396 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
CCNA1P78396 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC26.33■■□□□ 1.81
CCNA1P78396 AC008764.7-201ENST00000593779 1081 ntBASIC26.33■■□□□ 1.81
CCNA1P78396 SLC6A10P-202ENST00000431994 2058 ntBASIC26.33■■□□□ 1.81
CCNA1P78396 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCNA1P78396 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
CCNA1P78396 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.33■■□□□ 1.8
CCNA1P78396 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCNA1P78396 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CCNA1P78396 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CCNA1P78396 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCNA1P78396 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.32■■□□□ 1.8
CCNA1P78396 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CCNA1P78396 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.31■■□□□ 1.8
CCNA1P78396 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCNA1P78396 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms