Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.18■□□□□ 0.34
FOXA3P55318 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA3P55318 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA3P55318 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
FOXA3P55318 AC137767.1-201ENST00000602918 1920 ntBASIC17.17■□□□□ 0.34
FOXA3P55318 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
FOXA3P55318 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA3P55318 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.17■□□□□ 0.34
FOXA3P55318 AC044849.2-201ENST00000606596 710 ntBASIC17.17■□□□□ 0.34
FOXA3P55318 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA3P55318 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA3P55318 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.17■□□□□ 0.34
FOXA3P55318 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA3P55318 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
FOXA3P55318 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC17.16■□□□□ 0.34
FOXA3P55318 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
FOXA3P55318 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 BOD1-206ENST00000480951 814 ntTSL 2 BASIC17.16■□□□□ 0.34
FOXA3P55318 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC17.16■□□□□ 0.34
FOXA3P55318 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
FOXA3P55318 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
FOXA3P55318 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
FOXA3P55318 LINC00526-201ENST00000581067 1875 ntBASIC17.16■□□□□ 0.34
FOXA3P55318 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA3P55318 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.15■□□□□ 0.34
FOXA3P55318 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.15■□□□□ 0.34
FOXA3P55318 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
FOXA3P55318 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 DUX4L29-201ENST00000425409 679 ntBASIC17.15■□□□□ 0.34
FOXA3P55318 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
FOXA3P55318 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA3P55318 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.15■□□□□ 0.34
FOXA3P55318 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA3P55318 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA3P55318 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
FOXA3P55318 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
FOXA3P55318 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
FOXA3P55318 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA3P55318 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
FOXA3P55318 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.13■□□□□ 0.33
FOXA3P55318 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
FOXA3P55318 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
FOXA3P55318 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXA3P55318 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA3P55318 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
FOXA3P55318 DUSP8P3-201ENST00000399571 1760 ntBASIC17.12■□□□□ 0.33
FOXA3P55318 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
FOXA3P55318 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXA3P55318 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.12■□□□□ 0.33
FOXA3P55318 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXA3P55318 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
FOXA3P55318 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms