Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC30.92■■■□□ 2.54
COL18A1P39060 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC30.92■■■□□ 2.54
COL18A1P39060 AL138724.1-201ENST00000606771 1088 ntBASIC30.92■■■□□ 2.54
COL18A1P39060 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL18A1P39060 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL18A1P39060 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL18A1P39060 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
COL18A1P39060 AC099791.1-201ENST00000416440 715 ntBASIC30.92■■■□□ 2.54
COL18A1P39060 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL18A1P39060 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC30.91■■■□□ 2.54
COL18A1P39060 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC30.91■■■□□ 2.54
COL18A1P39060 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC30.91■■■□□ 2.54
COL18A1P39060 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL18A1P39060 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
COL18A1P39060 MIR6089-201ENST00000616698 64 ntBASIC30.9■■■□□ 2.54
COL18A1P39060 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL18A1P39060 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL18A1P39060 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
COL18A1P39060 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC30.89■■■□□ 2.54
COL18A1P39060 REST-206ENST00000612429 1376 ntTSL 5 BASIC30.89■■■□□ 2.54
COL18A1P39060 REST-207ENST00000616975 1370 ntTSL 5 BASIC30.89■■■□□ 2.54
COL18A1P39060 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL18A1P39060 AC009102.2-201ENST00000606772 1639 ntBASIC30.89■■■□□ 2.54
COL18A1P39060 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL18A1P39060 JTB-203ENST00000368589 1216 ntTSL 2 BASIC30.89■■■□□ 2.54
COL18A1P39060 AC006455.2-201ENST00000429931 906 ntBASIC30.89■■■□□ 2.54
COL18A1P39060 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
COL18A1P39060 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
COL18A1P39060 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
COL18A1P39060 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
COL18A1P39060 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC30.87■■■□□ 2.53
COL18A1P39060 AC092171.4-201ENST00000609130 632 ntBASIC30.87■■■□□ 2.53
COL18A1P39060 AC136469.2-201ENST00000623944 1028 ntBASIC30.87■■■□□ 2.53
COL18A1P39060 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL18A1P39060 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
COL18A1P39060 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
COL18A1P39060 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC30.87■■■□□ 2.53
COL18A1P39060 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC30.87■■■□□ 2.53
COL18A1P39060 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL18A1P39060 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
COL18A1P39060 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC30.86■■■□□ 2.53
COL18A1P39060 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL18A1P39060 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
COL18A1P39060 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC30.86■■■□□ 2.53
COL18A1P39060 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
COL18A1P39060 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
COL18A1P39060 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL18A1P39060 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC30.85■■■□□ 2.53
COL18A1P39060 SNX3-202ENST00000349379 890 ntTSL 2 BASIC30.85■■■□□ 2.53
COL18A1P39060 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
COL18A1P39060 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC30.85■■■□□ 2.53
COL18A1P39060 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL18A1P39060 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
COL18A1P39060 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
COL18A1P39060 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL18A1P39060 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC30.84■■■□□ 2.53
COL18A1P39060 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC30.84■■■□□ 2.53
COL18A1P39060 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL18A1P39060 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
COL18A1P39060 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL18A1P39060 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
COL18A1P39060 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL18A1P39060 HACD1-201ENST00000326961 773 ntTSL 2 BASIC30.84■■■□□ 2.53
COL18A1P39060 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC30.84■■■□□ 2.53
COL18A1P39060 AC008764.7-201ENST00000593779 1081 ntBASIC30.84■■■□□ 2.53
COL18A1P39060 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
COL18A1P39060 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL18A1P39060 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.83■■■□□ 2.53
COL18A1P39060 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC30.83■■■□□ 2.53
COL18A1P39060 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
COL18A1P39060 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.53
COL18A1P39060 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC30.83■■■□□ 2.53
COL18A1P39060 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC30.82■■■□□ 2.53
COL18A1P39060 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
COL18A1P39060 IRS3P-201ENST00000223076 1006 ntBASIC30.82■■■□□ 2.52
COL18A1P39060 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC30.82■■■□□ 2.52
COL18A1P39060 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC30.82■■■□□ 2.52
COL18A1P39060 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC30.82■■■□□ 2.52
COL18A1P39060 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
COL18A1P39060 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL18A1P39060 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL18A1P39060 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.82■■■□□ 2.52
COL18A1P39060 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
COL18A1P39060 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.82■■■□□ 2.52
COL18A1P39060 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC30.82■■■□□ 2.52
COL18A1P39060 STK32C-205ENST00000456004 607 ntTSL 2 BASIC30.81■■■□□ 2.52
COL18A1P39060 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL18A1P39060 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL18A1P39060 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL18A1P39060 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC30.79■■■□□ 2.52
COL18A1P39060 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
COL18A1P39060 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC30.79■■■□□ 2.52
COL18A1P39060 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC30.79■■■□□ 2.52
COL18A1P39060 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC30.79■■■□□ 2.52
COL18A1P39060 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL18A1P39060 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC30.79■■■□□ 2.52
COL18A1P39060 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC30.79■■■□□ 2.52
COL18A1P39060 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.79■■■□□ 2.52
COL18A1P39060 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC30.79■■■□□ 2.52
COL18A1P39060 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms