Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA1O95477 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA1O95477 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ABCA1O95477 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.2■□□□□ 0.66
ABCA1O95477 AC090877.2-201ENST00000558441 1738 ntBASIC19.2■□□□□ 0.66
ABCA1O95477 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA1O95477 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
ABCA1O95477 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA1O95477 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA1O95477 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA1O95477 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA1O95477 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.2■□□□□ 0.66
ABCA1O95477 AC034268.1-201ENST00000441047 882 ntBASIC19.2■□□□□ 0.66
ABCA1O95477 AC005703.6-201ENST00000623265 1329 ntBASIC19.19■□□□□ 0.66
ABCA1O95477 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCA1O95477 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCA1O95477 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCA1O95477 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCA1O95477 SRD5A1P1-201ENST00000442297 786 ntBASIC19.19■□□□□ 0.66
ABCA1O95477 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.19■□□□□ 0.66
ABCA1O95477 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.19■□□□□ 0.66
ABCA1O95477 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCA1O95477 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCA1O95477 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 AC091305.1-201ENST00000479476 895 ntBASIC19.18■□□□□ 0.66
ABCA1O95477 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.18■□□□□ 0.66
ABCA1O95477 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.18■□□□□ 0.66
ABCA1O95477 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA1O95477 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ABCA1O95477 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.17■□□□□ 0.66
ABCA1O95477 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA1O95477 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA1O95477 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA1O95477 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.17■□□□□ 0.66
ABCA1O95477 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
ABCA1O95477 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA1O95477 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA1O95477 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ABCA1O95477 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA1O95477 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA1O95477 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA1O95477 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA1O95477 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCA1O95477 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCA1O95477 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
ABCA1O95477 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCA1O95477 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCA1O95477 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA1O95477 SERBP1P1-201ENST00000396021 1160 ntBASIC19.14■□□□□ 0.66
ABCA1O95477 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
ABCA1O95477 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.14■□□□□ 0.66
ABCA1O95477 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA1O95477 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.14■□□□□ 0.65
ABCA1O95477 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.14■□□□□ 0.65
ABCA1O95477 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.14■□□□□ 0.65
ABCA1O95477 AC097639.1-201ENST00000565519 1891 ntBASIC19.14■□□□□ 0.65
ABCA1O95477 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA1O95477 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA1O95477 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA1O95477 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA1O95477 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA1O95477 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA1O95477 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.13■□□□□ 0.65
ABCA1O95477 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.13■□□□□ 0.65
ABCA1O95477 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA1O95477 AC096887.2-201ENST00000623443 1957 ntBASIC19.13■□□□□ 0.65
ABCA1O95477 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA1O95477 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.13■□□□□ 0.65
ABCA1O95477 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA1O95477 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA1O95477 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.12■□□□□ 0.65
ABCA1O95477 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
ABCA1O95477 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA1O95477 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA1O95477 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA1O95477 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.11■□□□□ 0.65
ABCA1O95477 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA1O95477 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA1O95477 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.11■□□□□ 0.65
ABCA1O95477 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA1O95477 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA1O95477 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ABCA1O95477 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ABCA1O95477 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ABCA1O95477 AC090192.1-201ENST00000517740 490 ntBASIC19.11■□□□□ 0.65
ABCA1O95477 CA15P2-201ENST00000611168 834 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms