Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.4■■□□□ 1.66
TRIM43BA6NCK2 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.4■■□□□ 1.66
TRIM43BA6NCK2 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.4■■□□□ 1.66
TRIM43BA6NCK2 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.4■■□□□ 1.66
TRIM43BA6NCK2 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
TRIM43BA6NCK2 AC136469.2-201ENST00000623944 1028 ntBASIC25.4■■□□□ 1.66
TRIM43BA6NCK2 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.39■■□□□ 1.66
TRIM43BA6NCK2 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
TRIM43BA6NCK2 AC009102.2-201ENST00000606772 1639 ntBASIC25.39■■□□□ 1.66
TRIM43BA6NCK2 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
TRIM43BA6NCK2 AC233992.3-201ENST00000607491 485 ntBASIC25.39■■□□□ 1.66
TRIM43BA6NCK2 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
TRIM43BA6NCK2 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
TRIM43BA6NCK2 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
TRIM43BA6NCK2 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
TRIM43BA6NCK2 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM43BA6NCK2 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM43BA6NCK2 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 AC097639.1-201ENST00000565519 1891 ntBASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM43BA6NCK2 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.35■■□□□ 1.65
TRIM43BA6NCK2 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
TRIM43BA6NCK2 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
TRIM43BA6NCK2 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.35■■□□□ 1.65
TRIM43BA6NCK2 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.35■■□□□ 1.65
TRIM43BA6NCK2 SLC47A1P1-202ENST00000449666 945 ntBASIC25.35■■□□□ 1.65
TRIM43BA6NCK2 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
TRIM43BA6NCK2 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM43BA6NCK2 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM43BA6NCK2 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.34■■□□□ 1.65
TRIM43BA6NCK2 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
TRIM43BA6NCK2 BX842568.3-201ENST00000418104 571 ntBASIC25.34■■□□□ 1.65
TRIM43BA6NCK2 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.34■■□□□ 1.65
TRIM43BA6NCK2 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM43BA6NCK2 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 AC096887.2-201ENST00000623443 1957 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 AC006455.2-201ENST00000429931 906 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 YBX1P1-201ENST00000445822 960 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4L2-201ENST00000561772 1275 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4L6-201ENST00000626483 1275 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4L1-201ENST00000627662 1275 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4L8-201ENST00000629013 1275 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4L3-201ENST00000630187 1275 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4L7-201ENST00000630678 1275 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 DUX4L5-201ENST00000630834 1275 ntBASIC25.33■■□□□ 1.65
TRIM43BA6NCK2 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM43BA6NCK2 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.32■■□□□ 1.64
TRIM43BA6NCK2 AC004911.1-201ENST00000416316 871 ntBASIC25.32■■□□□ 1.64
TRIM43BA6NCK2 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.32■■□□□ 1.64
TRIM43BA6NCK2 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM43BA6NCK2 AC131274.2-201ENST00000580697 1507 ntBASIC25.32■■□□□ 1.64
TRIM43BA6NCK2 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 ID1-201ENST00000376105 1233 ntBASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 C17orf82-201ENST00000623772 1530 ntBASIC25.31■■□□□ 1.64
TRIM43BA6NCK2 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms