Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 AC242376.2-201ENST00000619355 883 ntBASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC87Q9NVE4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 AC097065.1-201ENST00000425737 517 ntBASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 PHBP15-201ENST00000574228 665 ntBASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC87Q9NVE4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 AC007292.2-201ENST00000593524 1812 ntBASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 AP000356.3-201ENST00000382243 753 ntBASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 LINC01783-202ENST00000614408 828 ntBASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 BX284668.2-205ENST00000619677 828 ntBASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 LINC01165-201ENST00000445190 1623 ntBASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 AC020658.6-201ENST00000623564 1870 ntBASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC87Q9NVE4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 AC015909.3-201ENST00000572855 1794 ntBASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 REXO1L2P-201ENST00000425429 2069 ntBASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC18.83■□□□□ 0.61
CCDC87Q9NVE4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms