Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RPL13AP20-201ENST00000459725 609 ntBASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 AC092658.1-201ENST00000505836 891 ntBASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 SALL4P5-201ENST00000419001 1760 ntBASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 AC023090.2-201ENST00000625182 2110 ntBASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
CHMP4AQ9BY43 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
CHMP4AQ9BY43 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 TCAF2P1-201ENST00000291129 2421 ntBASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 MTX1P1-201ENST00000440904 838 ntBASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 FAM86HP-204ENST00000513466 959 ntBASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 FAM8A2P-201ENST00000528813 1142 ntBASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AC002472.3-201ENST00000640124 621 ntBASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AL023775.1-201ENST00000454907 1746 ntBASIC19.2■□□□□ 0.66
CHMP4AQ9BY43 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 MIR1908-201ENST00000410394 80 ntBASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 AP006547.1-201ENST00000563435 692 ntBASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 AC009542.2-202ENST00000619004 1067 ntBASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 AL359258.3-201ENST00000622910 2331 ntBASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4AQ9BY43 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms