Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 AC005237.2-201ENST00000434368 219 ntBASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 MTND6P24-201ENST00000440466 518 ntBASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 LINC00628-201ENST00000628516 1289 ntBASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 AF228730.6-201ENST00000641497 218 ntBASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 AC084121.3-201ENST00000641716 218 ntBASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 NUTM2HP-201ENST00000442076 2498 ntBASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AC023090.2-201ENST00000625182 2110 ntBASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AC004945.1-201ENST00000416738 983 ntBASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AL590627.1-203ENST00000421194 1026 ntBASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 KRT18P32-201ENST00000424695 1287 ntBASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 SERBP1P3-201ENST00000459980 809 ntBASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 SLC25A1P1-201ENST00000528351 927 ntBASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AC074044.1-201ENST00000609673 707 ntBASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CCDC28BQ9BUN5 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms