Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AC012441.1-201ENST00000446669 685 ntBASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 MIR4259-201ENST00000584466 101 ntBASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 AL023775.1-201ENST00000454907 1746 ntBASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLIP3Q96DZ5 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CLIP3Q96DZ5 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.71□□□□□ -0.06
CLIP3Q96DZ5 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CLIP3Q96DZ5 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.71□□□□□ -0.06
CLIP3Q96DZ5 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms