Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS2P54868 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
HMGCS2P54868 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 SALL4P5-201ENST00000419001 1760 ntBASIC17.28■□□□□ 0.36
HMGCS2P54868 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS2P54868 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGCS2P54868 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HMGCS2P54868 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGCS2P54868 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGCS2P54868 TLE1P1-201ENST00000422965 589 ntBASIC17.27■□□□□ 0.36
HMGCS2P54868 AC078875.1-201ENST00000431907 724 ntBASIC17.27■□□□□ 0.36
HMGCS2P54868 CICP12-201ENST00000455801 843 ntBASIC17.27■□□□□ 0.36
HMGCS2P54868 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGCS2P54868 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC17.27■□□□□ 0.36
HMGCS2P54868 RN7SL555P-201ENST00000584742 339 ntBASIC17.27■□□□□ 0.36
HMGCS2P54868 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC17.27■□□□□ 0.36
HMGCS2P54868 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGCS2P54868 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC17.27■□□□□ 0.36
HMGCS2P54868 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGCS2P54868 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
HMGCS2P54868 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGCS2P54868 TBC1D3J-201ENST00000620719 1426 ntBASIC17.27■□□□□ 0.35
HMGCS2P54868 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGCS2P54868 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.27■□□□□ 0.35
HMGCS2P54868 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGCS2P54868 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HMGCS2P54868 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGCS2P54868 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGCS2P54868 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGCS2P54868 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HMGCS2P54868 REXO1L2P-201ENST00000425429 2069 ntBASIC17.27■□□□□ 0.35
HMGCS2P54868 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HMGCS2P54868 AC020658.6-201ENST00000623564 1870 ntBASIC17.27■□□□□ 0.35
HMGCS2P54868 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.27■□□□□ 0.35
HMGCS2P54868 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGCS2P54868 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
HMGCS2P54868 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HMGCS2P54868 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HMGCS2P54868 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGCS2P54868 AC073352.2-201ENST00000609385 439 ntBASIC17.26■□□□□ 0.35
HMGCS2P54868 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGCS2P54868 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGCS2P54868 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
HMGCS2P54868 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGCS2P54868 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.26■□□□□ 0.35
HMGCS2P54868 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
HMGCS2P54868 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HMGCS2P54868 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGCS2P54868 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 KRT8P21-201ENST00000430398 1491 ntBASIC17.25■□□□□ 0.35
HMGCS2P54868 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGCS2P54868 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGCS2P54868 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms